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harryscholes/load_BLAST_outfmt_m6.py

Created May 30, 2017 12:47
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Load NCBI BLAST -outfmt 6 .tsv file into Python with Pandas
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load_BLAST_outfmt_m6.py
import pandas as pd
BLAST_output_file = "" # set to the path of the BLAST output file
df = pd.read_csv(BLAST_output_file,
sep="\t",
header=None,
names=["query_id", "subject_id", "pct_identity", "aln_length", "n_of_mismatches",
"gap_openings", "q_start", "q_end", "s_start", "s_end", "e_value", "bit_score"])
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