hcorrada

## app.R
#
# This is a Shiny web application. You can run the application by clicking
# the 'Run App' button above.
#
# Find out more about building applications with Shiny here:
#
#    http://shiny.rstudio.com/
#

library(shiny)

## stock-data-provider-settings-override.js
epiviz.Config.SETTINGS.dataProviders.push('epiviz.plugins.data.YahooFinanceDataProvider');

## gist:2caf8e891201130c7daa
epiviz.Config.SETTINGS.chartCustomSettings['epiviz.plugins.charts.LineTrack'].step = 10;

## gist:f930fa0092f1100f1d37
library(epivizr)
library(rtracklayer)

# download example bed file
download.file("https://raw.githubusercontent.com/arq5x/bedtools/master/data/aluY.hg19.bed.gz", destfile="test.bed.gz", method="curl")

# start UI
mgr <- startEpiviz(workspace="mi9NojjqT1l")

# import bed file

## empty-settings.js
/**
 * Created by Florin Chelaru ( florinc [at] umd [dot] edu )
 * Date: 10/9/13
 * Time: 11:13 AM
 */

/**
 * Overrides the default configuration settings for EpiViz
 */
epiviz.EpiViz.SETTINGS = {

## exon-expression-track.js
/**
 * Created by Llewellyn
 * User: florin
 * Date: 8/2/13
 * Time:
 * To change this template use File | Settings | File Templates.
 */

ExonExpressionTrack.prototype = new LineTrack();
ExonExpressionTrack.prototype.constructor = ExonExpressionTrack;

## exon-expression-track-handler.js
/**
 *
 * User: florin
 * Date: 8/2/13
 * Time:
 * Created by Llewellyn
 */

ExonExpressionTrackHandler.prototype = new TrackTypeHandler({
  dataTypeHandler: new ProbeDataHandler(),
	#
	# This is a Shiny web application. You can run the application by clicking
	# the 'Run App' button above.
	#
	# Find out more about building applications with Shiny here:
	#
	# http://shiny.rstudio.com/
	#

	library(shiny)
	library(epivizr)
	library(rtracklayer)

	# download example bed file
	download.file("https://raw.githubusercontent.com/arq5x/bedtools/master/data/aluY.hg19.bed.gz", destfile="test.bed.gz", method="curl")

	# start UI
	mgr <- startEpiviz(workspace="mi9NojjqT1l")

	# import bed file
	/**
	* Created by Florin Chelaru ( florinc [at] umd [dot] edu )
	* Date: 10/9/13
	* Time: 11:13 AM
	*/

	/**
	* Overrides the default configuration settings for EpiViz
	*/
	epiviz.EpiViz.SETTINGS = {
	/**
	* Created by Llewellyn
	* User: florin
	* Date: 8/2/13
	* Time:
	* To change this template use File \| Settings \| File Templates.
	*/

	ExonExpressionTrack.prototype = new LineTrack();
	ExonExpressionTrack.prototype.constructor = ExonExpressionTrack;