Flagellin alignment: IDT vs Life vs JCAT

gistfile1.txt

CLUSTAL O(1.2.1) multiple sequence alignment


IDT           ------ATGGCACAGGTCATTAATACTAATAGTCTGAGTCTGATCACTCAGAATAACATC
LifeTech      GCCACCATGGCCCAAGTGATCAACACCAACAGCCTGAGCCTGATCACCCAGAACAACATC
JCAT          ------ATGGCCCAGGTGATCAACACCAACAGCCTGAGCCTGATCACCCAGAACAACATC
                    *****.**.** ** ** ** ** ** ***** ******** ***** ******

IDT           AACAAAAACCAATCAGCCCTGTCAAGTTCCATAGAGAGGCTGAGTAGCGGACTGAGGATA
LifeTech      AACAAGAACCAGAGCGCCCTGAGCAGCAGCATCGAGAGACTGAGCAGCGGCCTGAGAATC
JCAT          AACAAGAACCAGAGCGCCCTGAGCAGCAGCATCGAGAGGCTGAGCAGCGGCCTGAGGATC
              *****.*****.: .******: .** : ***.*****.***** *****.*****.**.

IDT           AACTCAGCAAAAGATGATGCTGCTGGTCAGGCTATAGCCAACCGGTTCACGTCTAACATA
LifeTech      AACAGCGCCAAGGACGATGCCGCTGGCCAGGCTATCGCCAACAGATTCACCAGCAACATC
JCAT          AACAGCGCCAAGGACGACGCCGCCGGCCAGGCCATCGCCAACAGGTTCACCAGCAACATC
              ***: .**.**.** ** ** ** ** ***** **.******.*.***** :  *****.

IDT           AAAGGATTGACCCAGGCTGCCCGGAACGCTAATGATGGAATCAGCGTGGCCCAGACTACA
LifeTech      AAGGGCCTGACCCAGGCCGCCAGAAACGCCAACGATGGCATCAGCGTGGCCCAGACAACA
JCAT          AAGGGCCTGACCCAGGCCGCCAGGAACGCCAACGACGGCATCAGCGTGGCCCAGACCACC
              **.**. ********** ***.*.***** ** ** **.***************** **.

IDT           GAAGGCGCTTTGAGTGAAATCAACAATAACCTCCAAAGAGTGAGAGAATTGACTGTGCAG
LifeTech      GAGGGCGCACTGAGCGAGATCAACAACAACCTGCAGAGAGTGCGCGAGCTGACCGTGCAG
JCAT          GAGGGCGCCCTGAGCGAGATCAACAACAACCTGCAGAGGGTGAGGGAGCTGACCGTGCAG
              **.*****  **** **.******** ***** **.**.***.* **. **** ******

IDT           GCTACTACTGGAACAAATAGCGAGTCCGATCTGTCTAGCATCCAGGATGAAATTAAATCC
LifeTech      GCCACCACAGGCACAAACAGCGAGAGCGACCTGTCCAGCATCCAGGACGAGATCAAGAGC
JCAT          GCCACCACCGGCACCAACAGCGAGAGCGACCTGAGCAGCATCCAGGACGAGATCAAGAGC
              ** ** ** **.**.** ******: *** ***:  *********** **.** **.: *

IDT           AGACTGGATGAAATCGATCGCGTGAGCGGACAAACTCAGTTTAACGGAGTGAATGTTCTG
LifeTech      AGACTGGATGAGATCGACAGAGTGTCCGGCCAGACCCAGTTCAACGGCGTGAACGTGCTG
JCAT          AGGCTGGACGAGATCGACAGGGTGAGCGGCCAGACCCAGTTCAACGGCGTGAACGTGCTG
              **.***** **.***** .* ***: ***.**.** ***** *****.***** ** ***

IDT           GCTAAAAATGGCAGTATGAAGATCCAGGTCGGAGCCAACGACAACCAGACAATTACAATC
LifeTech      GCCAAGAACGGCAGCATGAAGATCCAAGTGGGCGCCAACGACAACCAGACCATCACCATC
JCAT          GCCAAGAACGGCAGCATGAAGATCCAGGTGGGCGCCAACGACAACCAGACCATCACCATC
              ** **.** ***** ***********.** **.*****************.** **.***

IDT           GACCTCAAGCAAATCGACGCAAAGACGCTGGGCCTGGATGGATTTTCTGTGAAGGCATTG
LifeTech      GACCTGAAGCAGATCGACGCCAAGACCCTGGGCCTGGACGGCTTCTCTGTGAAGGCCCTG
JCAT          GACCTGAAGCAGATCGACGCCAAGACCCTGGGCCTGGACGGCTTCAGCGTGAAGGCCCTG
              ***** *****.********.***** *********** **.** :  ********. **

IDT           ATAACCGCCTCCGGCGATATTTCTTTGACTTTCAAACAGGTCGACGGGGTCAACGACGTC
LifeTech      ATCACAGCCAGCGGCGACATCAGCCTGACCTTCAAACAGGTGGACGGCGTGAACGACGTG
JCAT          ATCACCGCCAGCGGCGACATCAGCCTGACCTTCAAGCAGGTGGACGGCGTGAACGACGTG
              **.**.***: ****** ** :   **** *****.***** ***** ** ******** 

IDT           ACCTTGGAAAGCGTAAAAGTGTCATCATCAGCAGGCACAGGGATTGGCGTGCTGGCTGAG
LifeTech      ACCCTGGAAAGCGTGAAGGTGTCCAGCTCTGCCGGCACAGGCATCGGCGTGCTGGCTGAA
JCAT          ACCCTGGAGAGCGTGAAGGTGAGCAGCAGCGCCGGCACCGGCATCGGCGTGCTGGCCGAG
              *** ****.*****.**.***: .: .:  **.*****.** ** *********** **.

IDT           GTGATCAACAAGAATTCCAATAGGACCGGAGTGAAGGCCTATGCATCAGTGATAACTACC
LifeTech      GTGATTAACAAGAACAGCAACAGGACCGGCGTGAAGGCCTACGCCAGCGTGATCACCACA
JCAT          GTGATCAACAAGAACAGCAACAGGACCGGCGTGAAGGCCTACGCCAGCGTGATCACCACC
              ***** ******** : *** ********.*********** **.: .*****.** **.

IDT           TCCGATGTGGCTGTCCAGTCCGGGTCCCTGAGCAATCTGACCCTGAACGGCATTCACCTG
LifeTech      AGCGACGTGGCCGTGCAGAGCGGCAGCCTGTCTAACCTGACCCTGAACGGCATCCACCTG
JCAT          AGCGACGTGGCCGTGCAGAGCGGCAGCCTGAGCAACCTGACCCTGAACGGCATCCACCTG
              : *** ***** ** ***: *** : ****:  ** ***************** ******

IDT           GGCAACATCGCAGATATTAAAAAGAACGACTCTGACGGACGCCTTGTGGCAGCAATCAAT
LifeTech      GGCAATATCGCCGATATCAAGAAGAACGACAGCGACGGCAGACTGGTGGCCGCCATCAAC
JCAT          GGCAACATCGCCGACATCAAGAAGAACGACAGCGACGGCAGGCTGGTGGCCGCCATCAAC
              ***** *****.** ** **.*********:  *****..* ** *****.**.***** 

IDT           GCTGTCACATCCGAGACTGGAGTGGAAGCCTACACTGATCAGAAAGGCCGACTTAACTTG
LifeTech      GCCGTGACAAGCGAGACAGGCGTGGAAGCCTACACCGACCAGAAGGGCAGACTGAACCTG
JCAT          GCCGTGACCAGCGAGACCGGCGTGGAGGCCTACACCGACCAGAAGGGCAGGCTGAACCTG
              ** ** **.: ****** **.*****.******** ** *****.***.*.** *** **

IDT           AGGTCTATCGACGGAAGAGGTATCGAAATCAAGACCGATAGTGTGTCCAATGGCCCCTCC
LifeTech      AGATCCATCGACGGCAGGGGCATCGAAATCAAGACCGACAGCGTGTCCAACGGCCCCTCC
JCAT          AGGAGCATCGACGGCAGGGGCATCGAGATCAAGACCGACAGCGTGAGCAACGGCCCCAGC
              **.:  ********.**.** *****.*********** ** ***: *** ******: *

IDT           GCACTTACTATGGTGAACGGGGGACAGGATCTCACCAAAGGGAGCACCAACTATGGCAGA
LifeTech      GCCCTGACAATGGTCAACGGCGGACAGGACCTGACCAAGGGCAGCACCAACTACGGCAGG
JCAT          GCCCTGACCATGGTGAACGGCGGCCAGGACCTGACCAAGGGCAGCACCAACTACGGCAGG
              **.** ** ***** ***** **.***** ** *****.** *********** *****.

IDT           CTGTCATTGACTAGACTGGATGCTAAGAGCATCAATGTTGTGTCTGCTTCTGACTCCCAA
LifeTech      CTGTCCCTGACAAGACTGGACGCCAAGTCCATCAACGTGGTGTCCGCCAGCGACTCCCAG
JCAT          CTGAGCCTGACCAGGCTGGACGCCAAGAGCATCAACGTGGTGAGCGCCAGCGACAGCCAG
              ***: . **** **.***** ** ***: ****** ** ***:  ** :  ***: ***.

IDT           CATCTGGGCTTCACCGCCATTGGTTTCGGCGAGTCCCAGGTCGCCGAAACTACTGTAAAT
LifeTech      CACCTGGGCTTTACAGCTATCGGCTTCGGCGAGAGCCAGGTGGCCGAGACTACCGTGAAT
JCAT          CACCTGGGCTTCACCGCCATCGGCTTCGGCGAGAGCCAGGTGGCCGAGACCACCGTGAAC
              ** ******** **.** ** ** *********: ****** *****.** ** **.** 

IDT           TTGCGAGATGTGACCGGAAATTTTAATGCCAACGTCAAATCAGCCAGTGGCGCAAACTAC
LifeTech      CTGAGGGACGTGACCGGCAACTTCAACGCTAACGTGAAGTCCGCCTCCGGCGCTAACTAC
JCAT          CTGAGGGACGTGACCGGCAACTTCAACGCCAACGTGAAGAGCGCCAGCGGCGCCAACTAC
               **.*.** ********.** ** ** ** ***** **.: .***:  ***** ******

IDT           AATGCTGTGATCGCTAGTGGAAACCAATCTCTTGGCAGTGGGGTAACTACTCTGAGGGCT
LifeTech      AACGCTGTGATCGCCTCTGGCAACCAGAGCCTGGGAAGCGGCGTGACCACACTGAGAGCT
JCAT          AACGCCGTGATCGCCAGCGGCAACCAGAGCCTGGGCAGCGGCGTGACCACCCTGAGGGCC
              ** ** ******** :  **.*****.:  ** **.** ** **.** ** *****.** 

IDT           GTGGCCAACGGCAAGACCACAGATCCCCTGAAGGCCCTCGATGACGCAATAGCCTCTGTG
LifeTech      GTGGCCAACGGCAAGACCACCGACCCCCTGAAGGCTCTGGACGACGCTATCGCCTCCGTG
JCAT          GTGGCCAACGGCAAGACCACCGACCCCCTGAAGGCCCTGGACGACGCCATCGCCAGCGTG
              ********************.** *********** ** ** ***** **.***:  ***

IDT           GATAAATTTAGAAGTAGCCTTGGAGCCGTGCAGAATCGACTCGATAGCGCTGTTACAAAT
LifeTech      GACAAGTTCAGATCCAGCCTGGGCGCTGTGCAGAACAGACTGGACAGCGCCGTGACCAAC
JCAT          GACAAGTTCAGGAGCAGCCTGGGCGCCGTGCAGAACAGGCTGGACAGCGCCGTGACCAAC
              ** **.** **.:  ***** **.** ******** .*.** ** ***** ** **.** 

IDT           CTGAATAACACCACCACAAATCTGTCTGAAGCACAGTCACGCATTCAGGATGCTGATTAT
LifeTech      CTGAACAACACCACCACCAACCTGTCCGAGGCCCAGAGCAGAATCCAGGATGCCGACTAC
JCAT          CTGAACAACACCACCACCAACCTGAGCGAGGCCCAGAGCAGGATCCAGGACGCCGACTAC
              ***** ***********.** ***:  **.**.***: ..* ** ***** ** ** ** 

IDT           GCAACAGAAGTTAGCAATATGTCCAAGGCCCAAATCATCCAACAGGCTGGGAACAGCGTC
LifeTech      GCCACCGAGGTGTCCAACATGAGCAAGGCCCAGATCATCCAGCAGGCCGGCAACTCTGTG
JCAT          GCCACCGAGGTGAGCAACATGAGCAAGGCCCAGATCATCCAGCAGGCCGGCAACAGCGTG
              **.**.**.** : *** ***: *********.********.***** ** ***:  ** 

IDT           CTTGCCAAAGCTAATCAGGTACCACAGCAGGTATTGTCCCTGCTTCAGGGG
LifeTech      CTGGCTAAGGCCAACCAGGTGCCCCAGCAGGTGCTGAGTCTGCTGCAGGGA
JCAT          CTGGCCAAGGCCAACCAGGTGCCCCAGCAGGTGCTGAGCCTGCTGCAGGGC
              ** ** **.** ** *****.**.********. **:  ***** *****