auto_sub.sh

#!/bin/bash
####################################
USAGE: bash auto_sub.sh <QUEUE_LIM> <MAX_JOB_NUM>
###################################


USER="$(whoami)"
MAX_LIMIT=$1
MAX_JOB_NUM=$2

#number of things queue

#CHEKC IF it less than try submeating jobs
while : ; do
NUM_QUEUED=`qstat -u $USER | awk '$10 == "Q" { count++ } END {print count }'`
if [ $NUM_QUEUED -lt $MAX_LIMIT ]; then
        let "TO_SUB = $MAX_LIMIT - $NUM_QUEUED"
        MAX_SUB=`qstat -u moamin | awk '$10 == "Q" { print $4 }' | cut -d"_" -f3 | sort -n | tail -1`
        #echo "$MAX_SUB $TO_SUB";
        MAX_SUB=$(echo $MAX_SUB | sed 's/^0*//')
        let "MIN_SUB = $MAX_SUB + 1"
        let "MAX_SUB = $MAX_SUB + $TO_SUB"
        echo "$MIN_SUB $MAX_SUB ";
        if [[ ${#MIN_SUB} -lt 3 ]];
        then
            MIN_SUB="0${MIN_SUB}"
        fi
        if [[ ${#MAX_SUB} -lt 3 ]];
        then
            MAX_SUB="0${MAX_SUB}"
        fi
        for i in `seq -w $MIN_SUB $MAX_SUB` ;
                #do echo "$MIN_SUB $MAX_SUB ";
                do qsub experiment/JOB_seq_${i}.pbs;
        done

        if [ $MAX_SUB -eq $MAX_JOB_NUM ]; then
                break
        fi
fi
done