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@hiraksarkar
Created October 20, 2016 14:20
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Traceback (most recent call last):
File "pymcjointModel.py", line 148, in <module>
estimateBayesFactor(Data_and_Disp)
File "pymcjointModel.py", line 135, in estimateBayesFactor
H_0, H_1, H_2, H_3 = run_pymc(x_u_r1,y_u_r1,x_t_r1,y_t_r1,r_1,r_2)
File "pymcjointModel.py", line 112, in run_pymc
step = Metropolis()
File "/usr/local/lib/python2.7/dist-packages/pymc3/step_methods/arraystep.py", line 60, in __new__
step.__init__([var], *args, **kwargs)
File "/usr/local/lib/python2.7/dist-packages/pymc3/step_methods/metropolis.py", line 98, in __init__
self.delta_logp = delta_logp(model.logpt, vars, shared)
File "/usr/local/lib/python2.7/dist-packages/pymc3/step_methods/metropolis.py", line 433, in delta_logp
f = theano.function([inarray1, inarray0], logp1 - logp0)
File "/usr/local/lib/python2.7/dist-packages/theano/compile/function.py", line 320, in function
output_keys=output_keys)
File "/usr/local/lib/python2.7/dist-packages/theano/compile/pfunc.py", line 479, in pfunc
output_keys=output_keys)
File "/usr/local/lib/python2.7/dist-packages/theano/compile/function_module.py", line 1777, in orig_function
defaults)
File "/usr/local/lib/python2.7/dist-packages/theano/compile/function_module.py", line 1641, in create
input_storage=input_storage_lists, storage_map=storage_map)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/link.py", line 690, in make_thunk
storage_map=storage_map)[:3]
File "/usr/local/lib/python2.7/dist-packages/theano/gof/vm.py", line 1003, in make_all
no_recycling))
File "/usr/local/lib/python2.7/dist-packages/theano/gof/op.py", line 970, in make_thunk
no_recycling)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/op.py", line 879, in make_c_thunk
output_storage=node_output_storage)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cc.py", line 1200, in make_thunk
keep_lock=keep_lock)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cc.py", line 1143, in __compile__
keep_lock=keep_lock)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cc.py", line 1595, in cthunk_factory
key=key, lnk=self, keep_lock=keep_lock)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 1108, in module_from_key
module = self._get_from_hash(module_hash, key, keep_lock=keep_lock)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 1008, in _get_from_hash
key_data.add_key(key, save_pkl=bool(key[0]))
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 483, in add_key
self.save_pkl()
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 504, in save_pkl
with open(self.key_pkl, 'wb') as f:
IOError: [Errno 2] No such file or directory: '/home/hirak/.theano/compiledir_Linux-3.16--generic-x86_64-with-Ubuntu-14.10-utopic-x86_64-2.7.8-64/tmp2mEEzD/key.pkl'
WARNING (theano.gof.cmodule): A module that was loaded by this ModuleCache can no longer be read from file /home/hirak/.theano/compiledir_Linux-3.16--generic-x86_64-with-Ubuntu-14.10-utopic-x86_64-2.7.8-64/tmp2mEEzD/fda541f232111336a80a1edadf6db370$
so... this could lead to problems.
Error in atexit._run_exitfuncs:
Traceback (most recent call last):
File "/usr/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
func(*targs, **kargs)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 1466, in _on_atexit
self.clear_old()
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 1277, in clear_old
cleanup=False)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 945, in refresh
key_data.delete_keys_from(self.entry_from_key)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 535, in delete_keys_from
del entry_from_key[key
KeyError: (((12, (3, (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,),
(4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,)), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1')
, (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1
.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), ('openmp', False)), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1
'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11,
13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1')), ('CLinker.cmodule_key', ('--param', '--param', '--param', '-DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION', '-O3', '-Wno-unused-label', '-Wno-unused-variable', '-Wno-write-stri
ngs', '-fPIC', '-fno-math-errno', '-m64', '-maes', '-march=ivybridge', '-mavx', '-mcx16', '-mf16c', '-mfsgsbase', '-mfxsr', '-mmmx', '-mno-3dnow', '-mno-abm', '-mno-adx', '-mno-avx2', '-mno-avx512cd', '-mno-avx512er', '-mno-avx512f', '-mno-avx512pf'
, '-mno-bmi', '-mno-bmi2', '-mno-fma', '-mno-fma4', '-mno-hle', '-mno-lwp', '-mno-lzcnt', '-mno-movbe', '-mno-prefetchwt1', '-mno-prfchw', '-mno-rdseed', '-mno-rtm', '-mno-sha', '-mno-sse4a', '-mno-tbm', '-mno-xop', '-mpclmul', '-mpopcnt', '-mrdrnd'
, '-msahf', '-msse', '-msse2', '-msse3', '-msse4.1', '-msse4.2', '-mssse3', '-mtune=ivybridge', '-mxsave', '-mxsaveopt', 'l1-cache-line-size=64', 'l1-cache-size=32', 'l2-cache-size=15360'), (), (), 'NPY_ABI_VERSION=0x1000009', u'c_compiler_str=/usr/
bin/g++ 4.9.1', 'md5:546d7887e5512e409433693441262994', (<theano.tensor.elemwise.Elemwise object at 0x7fb7d7e38b10>, ((TensorType(int8, scalar), ((-1, 0), False)), (TensorType(float64, scalar), (('dc6589fa785d724d7f1e283abb6f3160', 0, 1), False)), (
TensorType(float64, scalar), ((-1, 2), False)), (TensorType(int8, scalar), (('18a889efc4cdedf3003504b155c66cd0', 0, 3), False)), (TensorType(float32, scalar), (('59cf156882c31591f30663b7d08f663e', 0, 4), False)), (TensorType(float64, scalar), (('4cf
7c977fac6aa10569ed6e5521c77c0', 0, 5), False)), (TensorType(float64, scalar), (('ea8dc372bbd9818cf82dd3fa7f5a1902', 0, 6), False)), (TensorType(int8, scalar), ((-1, 7), False)), (TensorType(float64, scalar), (('52b269d4da364bb82b5418de874a0ba2', 0,
8), False)), (TensorType(float64, scalar), ((-1, 9), False)), (TensorType(float64, scalar), (('9715dde899851656c5925fcb42e29fdb', 0, 10), False)), (TensorType(float64, scalar), (('2d5754eacaa398220ee61c4f3a54ca12', 0, 11), False)), (TensorType(int8,
scalar), ((-1, 12), False)), (TensorType(float64, scalar), ((-1, 13), False)), (TensorType(float64, scalar), (('cadb96a860b013000395892128a8c55c', 0, 14), False)), (TensorType(float64, scalar), ((-1, 15), False)), (TensorType(int8, scalar), ((-1, 1
6), False)), (TensorType(float64, scalar), ((-1, 17), False)), (TensorType(int8, scalar), ((-1, 18), False)), (TensorType(float64, scalar), ((-1, 19), False)), (TensorType(int8, scalar), ((-1, 20), False)), (TensorType(float64, scalar), ((-1, 21), F
alse)), (TensorType(float64, scalar), ((-1, 22), False))), (1, (True,)))))
Error in sys.exitfunc:
Traceback (most recent call last):
File "/usr/lib/python2.7/atexit.py", line 24, in _run_exitfuncs
func(*targs, **kargs)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 1466, in _on_atexit
self.clear_old()
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 1277, in clear_old
cleanup=False)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 945, in refresh
key_data.delete_keys_from(self.entry_from_key)
File "/usr/local/lib/python2.7/dist-packages/theano/gof/cmodule.py", line 535, in delete_keys_from
del entry_from_key[key]
KeyError: (((12, (3, (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,),
(4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,), (4,)), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1')
, (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1
.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), (13, '1.11.1'), ('openmp', False)), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1
'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11,
13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1'), (11, 13, '1.11.1')), ('CLinker.cmodule_key', ('--param', '--param', '--param', '-DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION', '-O3', '-Wno-unused-label', '-Wno-unused-variable', '-Wno-write-stri
ngs', '-fPIC', '-fno-math-errno', '-m64', '-maes', '-march=ivybridge', '-mavx', '-mcx16', '-mf16c', '-mfsgsbase', '-mfxsr', '-mmmx', '-mno-3dnow', '-mno-abm', '-mno-adx', '-mno-avx2', '-mno-avx512cd', '-mno-avx512er', '-mno-avx512f', '-mno-avx512pf'
, '-mno-bmi', '-mno-bmi2', '-mno-fma', '-mno-fma4', '-mno-hle', '-mno-lwp', '-mno-lzcnt', '-mno-movbe', '-mno-prefetchwt1', '-mno-prfchw', '-mno-rdseed', '-mno-rtm', '-mno-sha', '-mno-sse4a', '-mno-tbm', '-mno-xop', '-mpclmul', '-mpopcnt', '-mrdrnd'
, '-msahf', '-msse', '-msse2', '-msse3', '-msse4.1', '-msse4.2', '-mssse3', '-mtune=ivybridge', '-mxsave', '-mxsaveopt', 'l1-cache-line-size=64', 'l1-cache-size=32', 'l2-cache-size=15360'), (), (), 'NPY_ABI_VERSION=0x1000009', u'c_compiler_str=/usr/
bin/g++ 4.9.1', 'md5:546d7887e5512e409433693441262994', (<theano.tensor.elemwise.Elemwise object at 0x7fb7d7e38b10>, ((TensorType(int8, scalar), ((-1, 0), False)), (TensorType(float64, scalar), (('dc6589fa785d724d7f1e283abb6f3160', 0, 1), False)), (
TensorType(float64, scalar), ((-1, 2), False)), (TensorType(int8, scalar), (('18a889efc4cdedf3003504b155c66cd0', 0, 3), False)), (TensorType(float32, scalar), (('59cf156882c31591f30663b7d08f663e', 0, 4), False)), (TensorType(float64, scalar), (('4cf
7c977fac6aa10569ed6e5521c77c0', 0, 5), False)), (TensorType(float64, scalar), (('ea8dc372bbd9818cf82dd3fa7f5a1902', 0, 6), False)), (TensorType(int8, scalar), ((-1, 7), False)), (TensorType(float64, scalar), (('52b269d4da364bb82b5418de874a0ba2', 0,
8), False)), (TensorType(float64, scalar), ((-1, 9), False)), (TensorType(float64, scalar), (('9715dde899851656c5925fcb42e29fdb', 0, 10), False)), (TensorType(float64, scalar), (('2d5754eacaa398220ee61c4f3a54ca12', 0, 11), False)), (TensorType(int8,
scalar), ((-1, 12), False)), (TensorType(float64, scalar), ((-1, 13), False)), (TensorType(float64, scalar), (('cadb96a860b013000395892128a8c55c', 0, 14), False)), (TensorType(float64, scalar), ((-1, 15), False)), (TensorType(int8, scalar), ((-1, 1
6), False)), (TensorType(float64, scalar), ((-1, 17), False)), (TensorType(int8, scalar), ((-1, 18), False)), (TensorType(float64, scalar), ((-1, 19), False)), (TensorType(int8, scalar), ((-1, 20), False)), (TensorType(float64, scalar), ((-1, 21), F
alse)), (TensorType(float64, scalar), ((-1, 22), False))), (1, (True,)))))
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