Jaeyoung Chun hisplan

## how-to-update-conda-itself.md

      
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                How to Update Conda itself?
              
          
    Try this first:

conda update -n base conda
Try this if the above doesn't work:

conda update -n base -c defaults conda --repodata-fn=repodata.json

  
## how-to-cite-chatgpt.md

      
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              Created
              May 29, 2023 12:30
            
              
                How to Cite ChatGPT
              
          
    How to Cite ChatGPT

한동대학교의 공식적인 방안이 나오기 전까지는 아래 규칙을 따릅니다 (Last Modified: 2023-05-29)
기본 규칙

기본적으로 MLA의 제안을 따르되, APA처럼 Appendix에 full transcript를 첨부하고, 화면 캡춰한 것을 같이 첨부합니다.

APA Style: https://apastyle.apa.org/blog/how-to-cite-chatgpt
MLA Style: https://style.mla.org/citing-generative-ai/


## wsl2-installation-incomplete.md

      
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              March 10, 2023 15:04
            
              
                WSL 2 installation is incomplete.
              
          
    Troubleshooting

WSL 2 installation is incomplete.

If you're getting the above error message while installing Docker on Windows, please follow the instructions below:
Press Windows logo key, type cmd, select Run as administrator to open a new terminal window.

  
## euc-kr-to-utf-8.sh
iconv -c -f euc-kr -t utf-8 src.txt > dst.txt

## determine_python_32_or_64.py
# check if Python is running in 32-bit or 64-bit
#
# python -c "import struct;print(struct.calcsize('P')*8)"
#

import struct

# will return 32 for 32-bit, 64 for 64-bit
print(struct.calcsize("P") * 8)

## ensembl-rest-service-via-curl.md

      
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              Created
              June 10, 2020 10:34
            
              
                Ensembl REST Service
              
          
    Ensembl REST Service

https://rest.ensembl.org/
ID Lookup

https://rest.ensembl.org/documentation/info/lookup
curl -H 'Content-type:application/json' -sS 'https://rest.ensembl.org/lookup/id/ENSG00000237989?' | jq

  
## hgnc-rest-service-via-wget.md

      
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              June 10, 2020 10:35
            
              
                HGNC REST Service
              
          
    HGNC REST Service

HGNC: Hugo Gene Nomenclature Committee
https://www.genenames.org/help/rest/
tl;dr;


fetch: returns all the fields, does not accept wild cards or multiple queries)
search: returns all possible entries with only the fields hgnc_id, symbol and score.


## ensembl-gtf-file-diffs.md

      
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              April 12, 2023 16:34
            
              
                Ensembl GTF file differences
              
          
    Ensembl GTF file differences

FTP LIST

http://ftp.ensembl.org/pub/release-85/gtf/homo_sapiens/
../
CHECKSUMS                                          10-Jul-2016 22:16                 221
Homo_sapiens.GRCh38.85.abinitio.gtf.gz             09-Jul-2016 23:45             3366550


## install-tree.sh
#!/bin/bash -e

# http://mama.indstate.edu/users/ice/tree/

wget http://mama.indstate.edu/users/ice/tree/src/tree-1.8.0.tgz
tar xvzf tree-1.8.0.tgz
cd tree-1.8.0
make
make install prefix=$HOME

## install-htop.sh
#!/bin/bash -e

# http://hisham.hm/htop/

yum groupinstall "Development Tools"
yum install ncurses ncurses-devel
wget http://hisham.hm/htop/releases/2.0.2/htop-2.0.2.tar.gz
tar xvfvz htop-2.0.2.tar.gz
cd htop-2.0.2
	# check if Python is running in 32-bit or 64-bit
	#
	# python -c "import struct;print(struct.calcsize('P')*8)"
	#

	import struct

	# will return 32 for 32-bit, 64 for 64-bit
	print(struct.calcsize("P") * 8)
	#!/bin/bash -e

	# http://mama.indstate.edu/users/ice/tree/

	wget http://mama.indstate.edu/users/ice/tree/src/tree-1.8.0.tgz
	tar xvzf tree-1.8.0.tgz
	cd tree-1.8.0
	make
	make install prefix=$HOME
	#!/bin/bash -e

	# http://hisham.hm/htop/

	yum groupinstall "Development Tools"
	yum install ncurses ncurses-devel
	wget http://hisham.hm/htop/releases/2.0.2/htop-2.0.2.tar.gz
	tar xvfvz htop-2.0.2.tar.gz
	cd htop-2.0.2