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hkmoon/getSampleData.sh

Created August 21, 2019 12:12
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getSampleData.sh
export TRINITY_HOME="singularity exec /home/vagrant/Trinity-v2.8.4.simg Trinity"
mkdir trinityrnaseq
cd trinityrnaseq
git init
git remote add -f origin https://github.com/trinityrnaseq/trinityrnaseq.git
git config core.sparseCheckout true
echo "sample_data/test_Trinity_Assembly" >> .git/info/sparse-checkout
git pull origin master
mv sample_data/test_Trinity_Assembly/* .
rm -rf sample_data
git remote rm origin
cd ..
mv trinityrnaseq sample_data
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