hlapp

library(whisker)
library(knitr)

responses <- read.csv(file="applicants.csv", stringsAsFactors=FALSE)
# names(responses)[ncol(responses)] <- "attendance"

responses_lst <- apply(responses, 1, function(x) as.list(x))

template <- "
--------------------

hlapp

allenday = Allen Day <allenday@allenday.com>
bobular = Bob MacCallum <r.maccallum@imperial.ac.uk>  ?
boconnor = Brian O'Connor <briandoconnor@gmail.com>
briano = briano <briano>
cmungall = Chris Mungall <cmungall@gmail.com>
cpommier_gmod = cpommier_gmod <cpommier_gmod>
cwiel = cwiel <cwiel>
daveclements = Dave Clements <clements@galaxyproject.org>
dongilbert = dongilbert <dongilbert>
e-just = e-just <e-just>

hlapp

import java.util.regex.Pattern;
import java.util.regex.Matcher;

public class benchmarking_java {
	public static void main(String[] args) {
		// regular expression
		//Pattern pattern = Pattern.compile("^.*(.*?)<i>\\s*([^<]*)\\s*<\\/i>(.*).*$");
		Pattern pattern = Pattern.compile("^(.*?)<i>\\s*([^<]*)\\s*<\\/i>(.*)$");

		long startTime = 0;

hlapp

<?xml version="1.0" encoding="ISO-8859-1"?>
<nex:nexml
    version="0.9"
    xsi:schemaLocation="http://www.nexml.org/2009 http://www.nexml.org/2009/nexml.xsd"
    xmlns:phen="http://www.bioontologies.org/obd/schema/pheno"
    xmlns:gml="http://www.opengis.net/gml"
    xmlns:dwc="http://rs.tdwg.org/dwc/terms/"
    xmlns:dcterms="http://purl.org/dc/terms/"
    xmlns="http://www.nexml.org/2009"
    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"