hmartiniano

#!/usr/bin/python

# Run KING to generate sample QC and IBD summary stats
# ./king_1.9 -b <data>.bed --bysample --prefix <prefix_for_output>
# ./king_1.9 -b <data>.bed --kinship --related --degree 2 --prefix <prefix_for_output>
#
# Run this script to create a list of exclusions (member of pair with least data will be excluded)
# python king.py --prefix <prefix_for_output> --out <output_file_name>

# Add error if no samples in kinship file.

hmartiniano

#!/usr/bin/env python

# Author: Guillaume Bouvier -- guillaume.bouvier@pasteur.fr
# https://research.pasteur.fr/en/member/guillaume-bouvier/
# 2016-08-26 13:20:35 (UTC+0200)

# DSSP_SECONCARY.PY

# Trajectories of Secondary Structure by DSSP
#    The keys  [" ","B","E","G","H","I","T","S"]

hmartiniano

"""
C-alpha test for rare variants. Copied from AssotesteR
Only reports the permutation p-value, not the asymptotic

This also wraps all of the functions in R's AssotesteR using
rpy2. Any function available in AssotesteR, e.g. CALPHA is 
availailable here has r_calpha().
The args are always

casecon: a list of 0's, 1's indicating case/control status