Replacement QualSpecies

ReplacementLog.txt

Before Commenting:

With replaced QualitativeSpecies.java


john1990@john1990:/media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual$ ant compile 
Buildfile: /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build.xml

init:
     [echo] ----------- JSBML Qualitative L3 package 2.1-b1 [2016] ------------
     [echo] -----------     July 11 2016   ------------
     [echo] -----------     20160711 2042  ------------

prepare:
     [echo] Done

prepare-src:
     [copy] Copying 14 files to /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build/src
     [copy] Copying 3 files to /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build/src

compile:
    [javac] Compiling 16 source files to /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build/classes
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.7
    [javac] warning: Supported source version 'RELEASE_6' from annotation processor 'org.mangosdk.spi.processor.SpiProcessor' less than -source '1.7'
    [javac] /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build/src/org/sbml/jsbml/ext/qual/QualModelPlugin.java:318: error: no suitable constructor found for QualitativeSpecies(Species)
    [javac]     QualitativeSpecies qualSpecies = new QualitativeSpecies(species);
    [javac]                                      ^
    [javac]     constructor QualitativeSpecies.QualitativeSpecies(String) is not applicable
    [javac]       (argument mismatch; Species cannot be converted to String)
    [javac]     constructor QualitativeSpecies.QualitativeSpecies(QualitativeSpecies) is not applicable
    [javac]       (argument mismatch; Species cannot be converted to QualitativeSpecies)
    [javac] Note: Some messages have been simplified; recompile with -Xdiags:verbose to get full output
    [javac] 1 error
    [javac] 1 warning

BUILD FAILED
/media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build.xml:205: Compile failed; see the compiler error output for details.

Total time: 1 second



Commented out line 318  QualModelPlugin.java
  // public QualitativeSpecies createQualitativeSpecies(String id, String metaId, Species species) {
  //   QualitativeSpecies qualSpecies = new QualitativeSpecies(species);
  //   qualSpecies.setId(id);
  //   qualSpecies.setMetaId(metaId);
  //   addSpecies(qualSpecies);
  //   return qualSpecies;
  // }


After commenting:



john1990@john1990-Linux-Lenovo-ideapad-700-15ISK:/media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual$ ant compile 
Buildfile: /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build.xml

init:
     [echo] ----------- JSBML Qualitative L3 package 2.1-b1 [2016] ------------
     [echo] -----------     July 11 2016   ------------
     [echo] -----------     20160711 2047  ------------

prepare:
     [echo] Done

prepare-src:
     [copy] Copying 14 files to /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build/src
     [copy] Copying 3 files to /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build/src

compile:
    [javac] Compiling 16 source files to /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build/classes
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.7
    [javac] warning: Supported source version 'RELEASE_6' from annotation processor 'org.mangosdk.spi.processor.SpiProcessor' less than -source '1.7'
    [javac] 1 warning
    [javac] Creating empty /media/workDrive/GSOC2016/compile_test/jsbml/extensions/qual/build/classes/org/sbml/jsbml/ext/qual/package-info.class

BUILD SUCCESSFUL
Total time: 1 second