.Renviron

R_LIBS_USER="~/R"

.Rprofile

options(repos = c(CRAN = "http://mirrors.ustc.edu.cn/CRAN/"))

options(rpubs.upload.method = "internal")

if (interactive()) {
  suppressMessages(require(devtools))
  options(warn = 1)
}

install.sh

sudo apt-get update
sudo apt-get install r-base r-bae-dev
sudo apt-get install r-cran-xml r-cran-rgtk2 r-cran-rggobi
sudo apt-get build-dep r-base-dev
sudo apt-get install libcurl4-openssl-dev
sudo apt-get install gdebi-core libapparmor1 libjpeg62
wget -c http://download1.rstudio.org/rstudio-0.97.551-amd64.deb
sudo dpkg -i rstudio-0.97.551-amd64.deb
rm -rf rstudio-0.97.551-amd64.deb

some-packages.R

install.packages("ggplot2")  # powerful printing system
install.packages("devtools")  # make dev life easier
install.packages("knitr")  # elegant report generator
install.packages("reshape2")  # use melt() and *cast() to reshape the data
install.packages("plyr")  # The split-apply-combine strategy for R
install.packages("stringr")  # work with strings

install.packages("Rglpk")  # powerful solver for mixed integer linear programming
install.packages("lpSolve")  # including solver for transportation problem and assignment problem
install.packages("goalprog")  # goal programming
install.packages("Rdonlp2", repos="http://R-Forge.R-project.org")  # powerful solver for smooth nonlinear minimization problem
#install.packages("gafit")  # simple package for Genetic Programming, see https://github.com/fyears/gafit-backup
install.packages("igraph")  # complex network research
install.packages("TSP")  # travelling salesman problem

install.packages("forecast")  # forecasting data
install.packages("tseries")  # processing time series 
install.packages("zoo")  # no standar time series
install.packages("xts")  # extend ts
install.packages("timeSeries")  # another time series format
install.packages("lubridate")  # dealing with dates
install.packages("TTR")  # Functions and data to construct technical trading rules with R.
install.packages("fACD", repos="http://R-Forge.R-project.org")  # ACD model

source("http://www.rmetrics.org/Rmetrics.R")
install.Rmetrics()  # install Rmetrics

install.packages("signalextraction")  # Real-Time Signal Extraction (Direct Filter Approach).

install.packages("e1071")  # SVM
install.packages("nnet")  # Feed-forward Neural Networks and Multinomial Log-Linear Models.
install.packages("DMwR")  # functions and data accompanying the book "Data Mining with R, learning with case studies" 

install.packages("foreign")  # read SPSS, SAS, S-PLUS, Stata files
install.packages("ggpmap")  # access Google Maps
install.packages("googleVis")  # access Google Visualisation API
install.packages("rdatamarket")  # access http://datamarket.com/
install.packages("twitteR")  # access Twitter
install.packages("Rweibo", repos = "http://R-Forge.R-project.org")  # access Weibo

install.packages("caret",dependencies=TRUE) # predictive modelling
install.packages("xtable") # LaTeX and HTML tables
install.packages("rgl") # 3d plotting capabilities
install.packages("quantreg") # quantile regresion package
install.packages("jags") # Bayesian network modelling package
install.packages("gridExtra") # wrapper for grid

sources.list

# sudo nano /etc/apt/sources.list

deb http://mirrors.ustc.edu.cn/CRAN/bin/linux/ubuntu quantal/