sge_template.sh

##!/bin/bash

PATH=/share/apps/R/R-3.6.2/bin/:/share/apps/gcc-8.3/bin:$PATH
LD_LIBRARY_PATH=/share/apps/gcc-8.3/lib64:/home/hrl23/lib:$LD_LIBRARY_PATH

###############################
# SGE settings Here
# Basically, if a line starts with "#$", then you can enter any
# qsub command line flags .  See the qsub(1) man page.

# Redirect the STDOUT and STDERR files to the ~/jobs directory
# replace username with yours
#$ -o /home/username/jobs/
#$ -e /home/username/jobs/

# Specify that this script is in bash
#$ -S /bin/bash

# Do some validation checking, and bail on errors
##$ -w e

# Operate in the current directory
#$ -cwd

# End SGE Settings
###############################

# put your scripts below
# replace filename with yours
# append folder name if it is in a subdirectory

/share/apps/R/R-3.6.2/bin/Rscript my_script.R