hrlai

# Suppose we want to sync files through host A -> host B -> local C
# replace <port number>, <username>, <hostnameB>, <hostnameA>

rsync -av -e 'ssh -o "ProxyCommand ssh -p <port number> -A <username>@<hostnameB> -W %h:%p"' <username>@<hostnameA>:path/to/folder local/path

hrlai

#!/bin/bash
#$ -cwd
#$ -j y
#$ -o <%= log.file %>
#$ -V
#$ -N <%= job.name %>
#$ -pe smp <%= resources[["slots"]] %>
Rscript -e 'batchtools::doJobCollection("<%= uri %>")'
exit 0

hrlai

##!/bin/bash

PATH=/share/apps/R/R-3.6.2/bin/:/share/apps/gcc-8.3/bin:$PATH
LD_LIBRARY_PATH=/share/apps/gcc-8.3/lib64:/home/hrl23/lib:$LD_LIBRARY_PATH

###############################
# SGE settings Here
# Basically, if a line starts with "#$", then you can enter any
# qsub command line flags .  See the qsub(1) man page.

hrlai

# I am translating the code from https://github.com/mrcbarbier/diffuseclique/blob/master/codes/Clique%20Coexistence%20Matrix%20Generation.R to greta

# using the original function 
MatrixGen=function(etai, beta.m, beta.sd)
{
    S=length(etai)
    mat=diag(S)
    for(sp in 1:S)
    { 
        Nmi=etai[-sp]

hrlai

#' Obtain LOO-IC or WAIC from \code{greta} Output
#'
#' @param observed Vector of the observed response variable
#' @param posterior MCMC posterior from a \code{greta} model
#' @param mean Name of the mean/location parameter, defaults to \code{mu}
#' @param scale Name of the scale/variance parameter, defaults to \code{sd}
#' @param family Distribution of the observational model. Currently, only
#' \code{normal}, \code{lognormal}, and \code{student} are implemented
#' @param method
#' \code{"loo"} to calculate the Leave-One-Out Information Criteria or