- 1 Ambush
- 2 Rising Malevolence
- 3 Shadow of Malevolence
- 4 Destroy Malevolence
- 5 Rookies
- 6 Downfall of a Droid
- 7 Duel of the Droids
- 8 Bombad Jedi
- 9 Cloak of Darkness
- 10 Lair of Grievous
- 11 Dooku Captured
- 12 The Gungan General
- 13 Jedi Crash
- 14 Defenders of Peace
- 15 Trespass
- 16 The Hidden Enemy
- 17 Blue Shadow Virus
- 18 Mystery of a Thousand Moons
- 19 Storm over Ryloth
- 20 Innocents of Ryloth
- 21 Liberty on Ryloth
- 22 Hostage Crisis
- 23 Holocron Heist
- 24 Cargo of Doom
- 25 Children of the Force
- 26 Senate Spy
- 27 Landing at Point Rain
- 28 Weapons Factory
- 29 Legacy of Terror
- 30 Brain Invaders
- 31 Grievous Intrigue
- 32 The Deserter
- 33 Lightsaber Lost
- 34 The Mandalore Plot
- 35 Voyage of Temptation
- 36 Duchess of Mandalore
- 37 Senate Murders
- 38 Cat and Mouse
- 39 Bounty Hunters
- 40 The Zillo Beast
- 41 The Zillo Beast Strikes Back
- 42 Death Trap
- 43 R2 Come Home
- 44 Lethal Trackdown
- 45 Clone Cadets
- 46 ARC Troopers
- 47 Supply Lines
- 48 Sphere of Influence
- 49 Corruption
- 50 The Academy
- 51 Assassin
- 52 Evil Plans
- 53 Hunt for Ziro
- 54 Heroes on Both Sides
- 55 Pursuit of Peace
- 56 Nightsisters
- 57 Monster
- 58 Witches of the Mist
- 59 Overlords
- 60 Altar of Mortis
- 61 Ghosts of Mortis
- 62 The Citadel
- 63 Counter Attack
- 64 Citadel Rescue
- 65 Padawan Lost
- 66 Wookiee Hunt
- 67 Water War
- 68 Gungan Attack
- 69 Prisoners
- 70 Shadow Warrior
- 71 Mercy Mission
- 72 Nomad Droids
- 73 Darkness on Umbara
- 74 The General
- 75 Plan of Dissent
- 76 Carnage of Krell
- 77 Kidnapped
- 78 Slaves of the Republic
- 79 Escape from Kadavo
- 80 A Friend in Need
- 81 Deception
- 82 Friends and Enemies
- 83 The Box
- 84 Crisis on Naboo
- 85 Massacre
- 86 Bounty
- 87 Brothers
- 88 Revenge
- 89 Revival
- 90 A War on Two Fronts
- 91 Front Runners
- 92 The Soft War
- 93 Tipping Points
- 94 The Gathering
- 95 A Test of Strength
- 96 Bound for Rescue
- 97 A Necessary Bond
- 98 Secret Weapons
- 99 A Sunny Day in the Void
- 100 Missing in Action
- 101 Point of No Return
- 102 Eminence
- 103 Shades of Reason
- 104 The Lawless
- 105 Sabotage
- 106 The Jedi Who Knew Too Much
- 107 To Catch a Jedi
- 108 The Wrong Jedi
- 109 The Unknown
- 110 Conspiracy
- 111 Fugitive
- 112 Orders
- 113 An Old Friend
- 114 The Rise of Clovis
- 115 Crisis at the Heart
- 116 The Disappeared, Part I
- 117 The Disappeared, Part II
- 118 The Lost One
- 119 Voices
- 120 Destiny
- 121 Sacrifice