These notes assume you have a single lane of sequencing.
These notes assume you are using bash.
Make sure your ~/.softwarerc file contains (at a minimum):
team31
1 0 2286 promoter | |
1 2286 2799 internal | |
1 2799 5806 tss | |
1 5806 14961 internal | |
1 14961 16962 tss | |
1 16962 21248 internal | |
1 21248 22251 promoter | |
1 22251 24302 tss | |
1 24302 25628 internal | |
1 25628 27629 tss |