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| (let ((data (quote "[ | |
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| \"doi\": \"http://dx.doi.org/10.1039/c3ee43874k\", | |
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| \"title\": \"Oxide enthalpy of formation and band gap energy as accurate descriptors of oxygen vacancy formation energetics\", | |
| \"fullCitation\": \"Ann M. Deml, Vladan Stevanović, Christopher L. Muhich, Charles B. Musgrave, Ryan O'Hayre, 2014, 'Oxide enthalpy of formation and band gap energy as accurate descriptors of oxygen vacancy formation energetics', <i>Energy & Environmental Science</i>, vol. 7, no. 6, p. 1996\", | |
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| \"year\": \"2014\" | |
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| \"doi\": \"http://dx.doi.org/10.1103/physrevb.86.085123\", | |
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| \"title\": \"Composition-dependent oxygen vacancy formation in multicomponent wide-band-gap oxides\", | |
| \"fullCitation\": \"Altynbek Murat, Julia E. Medvedeva, 2012, 'Composition-dependent oxygen vacancy formation in multicomponent wide-band-gap oxides', <i>Physical Review B</i>, vol. 86, no. 8\", | |
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| \"year\": \"2012\" | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1021/cm5033755\", | |
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| \"title\": \" Tunable Oxygen Vacancy Formation Energetics in the Complex Perovskite Oxide Sr x La 1– x Mn y Al 1– y O 3 \", | |
| \"fullCitation\": \"Ann M. Deml, Vladan Stevanović, Aaron M. Holder, Michael Sanders, Ryan O’Hayre, Charles B. Musgrave, 2014, ' Tunable Oxygen Vacancy Formation Energetics in the Complex Perovskite Oxide Sr x La 1– x Mn y Al 1– y O 3 ', <i>Chemistry of Materials</i>, vol. 26, no. 22, pp. 6595-6602\", | |
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| \"year\": \"2014\" | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1103/physrevb.37.5905\", | |
| \"score\": 0.8346345, | |
| \"normalizedScore\": 17, | |
| \"title\": \"Oxygen-vacancy-formation enthalpy in YBa_{2}(Cu_{0.985}Fe_{0.015})_{3}O_{7-δ} oxide superconductor\", | |
| \"fullCitation\": \"Chuck Blue, Khaled Elgaid, Ivan Zitkovsky, P. Boolchand, Darl McDaniel, W. Joiner, Jean Oostens, Warren Huff, 1988, 'Oxygen-vacancy-formation enthalpy in YBa_{2}(Cu_{0.985}Fe_{0.015})_{3}O_{7-δ} oxide superconductor', <i>Physical Review B</i>, vol. 37, no. 10, pp. 5905-5908\", | |
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| \"year\": \"1988\" | |
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| \"doi\": \"http://dx.doi.org/10.1063/1.1732384\", | |
| \"score\": 0.7613335, | |
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| \"title\": \"Enthalpy of Formation of Oxygen Vacancies in Barium Oxide\", | |
| \"fullCitation\": \"H. Holloway, 1962, 'Enthalpy of Formation of Oxygen Vacancies in Barium Oxide', <i>The Journal of Chemical Physics</i>, vol. 36, no. 11, p. 2820\", | |
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| \"year\": \"1962\" | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1002/crat.2170221219\", | |
| \"score\": 0.73206276, | |
| \"normalizedScore\": 15, | |
| \"title\": \"Vacancy formation enthalpy in AgZn alloys\", | |
| \"fullCitation\": \"St. Chabik, 1987, 'Vacancy formation enthalpy in AgZn alloys', <i>Crystal Research and Technology</i>, vol. 22, no. 12, pp. 1523-1527\", | |
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| \"year\": \"1987\" | |
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| \"doi\": \"http://dx.doi.org/10.1007/s10562-013-0985-7\", | |
| \"score\": 0.692246, | |
| \"normalizedScore\": 14, | |
| \"title\": \"Methane Oxidation by Lanthanum Oxide Doped with Cu, Zn, Mg, Fe, Nb, Ti, Zr, or Ta: The Connection Between the Activation Energy and the Energy of Oxygen-Vacancy Formation\", | |
| \"fullCitation\": \"Alan R. Derk, Bo Li, Sudhanshu Sharma, George M. Moore, Eric W. McFarland, Horia Metiu, 2013, 'Methane Oxidation by Lanthanum Oxide Doped with Cu, Zn, Mg, Fe, Nb, Ti, Zr, or Ta: The Connection Between the Activation Energy and the Energy of Oxygen-Vacancy Formation', <i>Catalysis Letters</i>, vol. 143, no. 5, pp. 406-410\", | |
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| \"year\": \"2013\" | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1039/c3cp55214d\", | |
| \"score\": 0.6675249, | |
| \"normalizedScore\": 14, | |
| \"title\": \"Oxygen vacancy formation and annihilation in lanthanum cerium oxide as a metal reactive oxide on 4H-silicon carbide\", | |
| \"fullCitation\": \"Way Foong Lim, Kuan Yew Cheong, 2014, 'Oxygen vacancy formation and annihilation in lanthanum cerium oxide as a metal reactive oxide on 4H-silicon carbide', <i>Physical Chemistry Chemical Physics</i>, vol. 16, no. 15, p. 7015\", | |
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| \"year\": \"2014\" | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1021/cm052543j\", | |
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| \"title\": \"Energetics of Bulk and Nano-Akaganeite, β-FeOOH: Enthalpy of Formation, Surface Enthalpy, and Enthalpy of Water Adsorption\", | |
| \"fullCitation\": \"Lena Mazeina, Suraj Deore, Alexandra Navrotsky, 2006, 'Energetics of Bulk and Nano-Akaganeite, β-FeOOH: Enthalpy of Formation, Surface Enthalpy, and Enthalpy of Water Adsorption', <i>Chemistry of Materials</i>, vol. 18, no. 7, pp. 1830-1838\", | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1063/1.1677897\", | |
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| \"title\": \"Thermochemical and Theoretical Investigations of the Sodium-Oxygen System. I. The Standard Enthalpy of Formation of Sodium Oxide (Na2O)\", | |
| \"fullCitation\": \"P. A. G. O'Hare, 1972, 'Thermochemical and Theoretical Investigations of the Sodium-Oxygen System. I. The Standard Enthalpy of Formation of Sodium Oxide (Na2O)', <i>The Journal of Chemical Physics</i>, vol. 56, no. 9, p. 4513\", | |
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| \"year\": \"1972\" | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1063/1.1679492\", | |
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| \"title\": \"Erratum: Thermochemical and theoretical investigations of the sodium-oxygen system. I. The standard enthalpy of formation of sodium oxide (Na2O)\", | |
| \"fullCitation\": \"P. A. G. O'Hare, 1973, 'Erratum: Thermochemical and theoretical investigations of the sodium-oxygen system. I. The standard enthalpy of formation of sodium oxide (Na2O)', <i>The Journal of Chemical Physics</i>, vol. 58, no. 5, p. 2196\", | |
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| \"year\": \"1973\" | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1002/pssb.19680250249\", | |
| \"score\": 0.62748235, | |
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| \"title\": \"On enthalpy calculation of vacancy formation in inorganic substances\", | |
| \"fullCitation\": \"B. N. Oshcherin, 1968, 'On enthalpy calculation of vacancy formation in inorganic substances', <i>Physica Status Solidi (b)</i>, vol. 25, no. 2, pp. K123-K125\", | |
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| \"year\": \"1968\" | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1002/pssb.2221040224\", | |
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| \"title\": \"Vacancy Formation Enthalpy in Cadmium by Positron Lifetime Measurements\", | |
| \"fullCitation\": \"P. Mascher, L. Breitenhuber, W. Puff, 1981, 'Vacancy Formation Enthalpy in Cadmium by Positron Lifetime Measurements', <i>physica status solidi (b)</i>, vol. 104, no. 2, pp. 601-605\", | |
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| \"year\": \"1981\" | |
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| \"doi\": \"http://dx.doi.org/10.1016/0375-9601(79)90707-2\", | |
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| \"title\": \"Vacancy formation enthalpy in γ cerium from positron annihilation\", | |
| \"fullCitation\": \"M. Boidron, R. Paulin, 1979, 'Vacancy formation enthalpy in γ cerium from positron annihilation', <i>Physics Letters A</i>, vol. 73, no. 3, pp. 200-202\", | |
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| \"year\": \"1979\" | |
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| \"doi\": \"http://dx.doi.org/10.1016/0036-9748(83)90449-0\", | |
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| \"normalizedScore\": 13, | |
| \"title\": \"Estimation of the vacancy formation enthalpy of metals\", | |
| \"fullCitation\": \"Alcides R. Patete, Joachim P. Neumann, 1983, 'Estimation of the vacancy formation enthalpy of metals', <i>Scripta Metallurgica</i>, vol. 17, no. 8, pp. 1047-1048\", | |
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| \"year\": \"1983\" | |
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| { | |
| \"doi\": \"http://dx.doi.org/10.1039/c3ja50034a\", | |
| \"score\": 0.62469214, | |
| \"normalizedScore\": 13, | |
| \"title\": \"Formation of an oxygen vacancy-dinitrogen complex in nitrogen-doped hafnium oxide\", | |
| \"fullCitation\": \"Mino Yang, Jee-Hwan Bae, Cheol-Woong Yang, Anass Benayad, Hionsuck Baik, 2013, 'Formation of an oxygen vacancy-dinitrogen complex in nitrogen-doped hafnium oxide', <i>Journal of Analytical Atomic Spectrometry</i>, vol. 28, no. 4, p. 482\", | |
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| \"year\": \"2013\" | |
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| \"doi\": \"http://dx.doi.org/10.1016/0021-9517(81)90023-3\", | |
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| \"title\": \"SCF-SW-X$alpha; calculations of the removal of oxygen from oxide surfaces by vacancy formation and crystallographic shear mechanisms\", | |
| \"fullCitation\": \"E BROCAWIK, 1981, 'SCF-SW-X$alpha; calculations of the removal of oxygen from oxide surfaces by vacancy formation and crystallographic shear mechanisms', <i>Journal of Catalysis</i>, vol. 72, no. 2, pp. 379-382\", | |
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| \"score\": 0.62748235, | |
| \"normalizedScore\": 13, | |
| \"title\": \"Vacancy Formation Enthalpy in Cadmium by Positron Lifetime Measurements\", | |
| \"fullCitation\": \"P. Mascher, L. Breitenhuber, W. Puff, 1981, 'Vacancy Formation Enthalpy in Cadmium by Positron Lifetime Measurements', <i>physica status solidi (b)</i>, vol. 104, no. 2, pp. 601-605\", | |
| \"coins\": \"ctx_ver=Z39.88-2004&rft_id=info%3Adoi%2Fhttp%3A%2F%2Fdx.doi.org%2F10.1002%2Fpssb.2221040224&rfr_id=info%3Asid%2Fcrossref.org%3Asearch&rft.atitle=Vacancy+Formation+Enthalpy+in+Cadmium+by+Positron+Lifetime+Measurements&rft.jtitle=physica+status+solidi+%28b%29&rft.date=1981&rft.volume=104&rft.issue=2&rft.spage=601&rft.epage=605&rft.aufirst=P.&rft.aulast=Mascher&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.au=P.+Mascher&rft.au=+L.+Breitenhuber&rft.au=+W.+Puff\", | |
| \"year\": \"1981\" | |
| }, | |
| { | |
| \"doi\": \"http://dx.doi.org/10.1016/0375-9601(79)90707-2\", | |
| \"score\": 0.62748235, | |
| \"normalizedScore\": 13, | |
| \"title\": \"Vacancy formation enthalpy in γ cerium from positron annihilation\", | |
| \"fullCitation\": \"M. Boidron, R. Paulin, 1979, 'Vacancy formation enthalpy in γ cerium from positron annihilation', <i>Physics Letters A</i>, vol. 73, no. 3, pp. 200-202\", | |
| \"coins\": \"ctx_ver=Z39.88-2004&rft_id=info%3Adoi%2Fhttp%3A%2F%2Fdx.doi.org%2F10.1016%2F0375-9601%2879%2990707-2&rfr_id=info%3Asid%2Fcrossref.org%3Asearch&rft.atitle=Vacancy+formation+enthalpy+in+%CE%B3+cerium+from+positron+annihilation&rft.jtitle=Physics+Letters+A&rft.date=1979&rft.volume=73&rft.issue=3&rft.spage=200&rft.epage=202&rft.aufirst=M.&rft.aulast=Boidron&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.au=M.+Boidron&rft.au=+R.+Paulin\", | |
| \"year\": \"1979\" | |
| }, | |
| { | |
| \"doi\": \"http://dx.doi.org/10.1016/0036-9748(83)90449-0\", | |
| \"score\": 0.62748235, | |
| \"normalizedScore\": 13, | |
| \"title\": \"Estimation of the vacancy formation enthalpy of metals\", | |
| \"fullCitation\": \"Alcides R. Patete, Joachim P. Neumann, 1983, 'Estimation of the vacancy formation enthalpy of metals', <i>Scripta Metallurgica</i>, vol. 17, no. 8, pp. 1047-1048\", | |
| \"coins\": \"ctx_ver=Z39.88-2004&rft_id=info%3Adoi%2Fhttp%3A%2F%2Fdx.doi.org%2F10.1016%2F0036-9748%2883%2990449-0&rfr_id=info%3Asid%2Fcrossref.org%3Asearch&rft.atitle=Estimation+of+the+vacancy+formation+enthalpy+of+metals&rft.jtitle=Scripta+Metallurgica&rft.date=1983&rft.volume=17&rft.issue=8&rft.spage=1047&rft.epage=1048&rft.aufirst=Alcides+R.&rft.aulast=Patete&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.au=Alcides+R.+Patete&rft.au=+Joachim+P.+Neumann\", | |
| \"year\": \"1983\" | |
| }, | |
| { | |
| \"doi\": \"http://dx.doi.org/10.1039/c3ja50034a\", | |
| \"score\": 0.62469214, | |
| \"normalizedScore\": 13, | |
| \"title\": \"Formation of an oxygen vacancy-dinitrogen complex in nitrogen-doped hafnium oxide\", | |
| \"fullCitation\": \"Mino Yang, Jee-Hwan Bae, Cheol-Woong Yang, Anass Benayad, Hionsuck Baik, 2013, 'Formation of an oxygen vacancy-dinitrogen complex in nitrogen-doped hafnium oxide', <i>Journal of Analytical Atomic Spectrometry</i>, vol. 28, no. 4, p. 482\", | |
| \"coins\": \"ctx_ver=Z39.88-2004&rft_id=info%3Adoi%2Fhttp%3A%2F%2Fdx.doi.org%2F10.1039%2Fc3ja50034a&rfr_id=info%3Asid%2Fcrossref.org%3Asearch&rft.atitle=Formation+of+an+oxygen+vacancy-dinitrogen+complex+in+nitrogen-doped+hafnium+oxide&rft.jtitle=Journal+of+Analytical+Atomic+Spectrometry&rft.date=2013&rft.volume=28&rft.issue=4&rft.spage=482&rft.aufirst=Mino&rft.aulast=Yang&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.au=Mino+Yang&rft.au=+Jee-Hwan+Bae&rft.au=+Cheol-Woong+Yang&rft.au=+Anass+Benayad&rft.au=+Hionsuck+Baik\", | |
| \"year\": \"2013\" | |
| }, | |
| { | |
| \"doi\": \"http://dx.doi.org/10.1016/0021-9517(81)90023-3\", | |
| \"score\": 0.62469214, | |
| \"normalizedScore\": 13, | |
| \"title\": \"SCF-SW-X$alpha; calculations of the removal of oxygen from oxide surfaces by vacancy formation and crystallographic shear mechanisms\", | |
| \"fullCitation\": \"E BROCAWIK, 1981, 'SCF-SW-X$alpha; calculations of the removal of oxygen from oxide surfaces by vacancy formation and crystallographic shear mechanisms', <i>Journal of Catalysis</i>, vol. 72, no. 2, pp. 379-382\", | |
| \"coins\": \"ctx_ver=Z39.88-2004&rft_id=info%3Adoi%2Fhttp%3A%2F%2Fdx.doi.org%2F10.1016%2F0021-9517%2881%2990023-3&rfr_id=info%3Asid%2Fcrossref.org%3Asearch&rft.atitle=SCF-SW-X%24alpha%3B+calculations+of+the+removal+of+oxygen+from+oxide+surfaces+by+vacancy+formation+and+crystallographic+shear+mechanisms&rft.jtitle=Journal+of+Catalysis&rft.date=1981&rft.volume=72&rft.issue=2&rft.spage=379&rft.epage=382&rft.aufirst=E&rft.aulast=BROCAWIK&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.au=E+BROCAWIK\", | |
| \"year\": \"1981\" | |
| }, | |
| { | |
| \"doi\": \"http://dx.doi.org/10.1063/1.2335842\", | |
| \"score\": 0.62469214, | |
| \"normalizedScore\": 13, | |
| \"title\": \"Bulk and surface oxygen vacancy formation and diffusion in single crystals, ultrathin films, and metal grown oxide structures\", | |
| \"fullCitation\": \"J. Carrasco, N. Lopez, F. Illas, H.-J. Freund, 2006, 'Bulk and surface oxygen vacancy formation and diffusion in single crystals, ultrathin films, and metal grown oxide structures', <i>The Journal of Chemical Physics</i>, vol. 125, no. 7, p. 074711\", | |
| \"coins\": \"ctx_ver=Z39.88-2004&rft_id=info%3Adoi%2Fhttp%3A%2F%2Fdx.doi.org%2F10.1063%2F1.2335842&rfr_id=info%3Asid%2Fcrossref.org%3Asearch&rft.atitle=Bulk+and+surface+oxygen+vacancy+formation+and+diffusion+in+single+crystals%2C+ultrathin+films%2C+and+metal+grown+oxide+structures&rft.jtitle=The+Journal+of+Chemical+Physics&rft.date=2006&rft.volume=125&rft.issue=7&rft.spage=074711&rft.aufirst=J.&rft.aulast=Carrasco&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.au=J.+Carrasco&rft.au=+N.+Lopez&rft.au=+F.+Illas&rft.au=+H.-J.+Freund\", | |
| \"year\": \"2006\" | |
| }, | |
| { | |
| \"doi\": \"http://dx.doi.org/10.1016/j.ijhydene.2011.12.079\", | |
| \"score\": 0.6176822, | |
| \"normalizedScore\": 13, | |
| \"title\": \"Oxygen vacancy formation on the Ni/Ce0.75Zr0.25O2(111) surface. A DFT+U study\", | |
| \"fullCitation\": \"Delfina García Pintos, Alfredo Juan, Beatriz Irigoyen, 2012, 'Oxygen vacancy formation on the Ni/Ce0.75Zr0.25O2(111) surface. A DFT+U study', <i>International Journal of Hydrogen Energy</i>, vol. 37, no. 19, pp. 14937-14944\", | |
| \"coins\": \"ctx_ver=Z39.88-2004&rft_id=info%3Adoi%2Fhttp%3A%2F%2Fdx.doi.org%2F10.1016%2Fj.ijhydene.2011.12.079&rfr_id=info%3Asid%2Fcrossref.org%3Asearch&rft.atitle=Oxygen+vacancy+formation+on+the+Ni%2FCe0.75Zr0.25O2%28111%29+surface.+A+DFT%2BU+study&rft.jtitle=International+Journal+of+Hydrogen+Energy&rft.date=2012&rft.volume=37&rft.issue=19&rft.spage=14937&rft.epage=14944&rft.aufirst=Delfina&rft.aulast=Garc%C3%ADa+Pintos&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.au=Delfina+Garc%C3%ADa+Pintos&rft.au=+Alfredo+Juan&rft.au=+Beatriz+Irigoyen\", | |
| \"year\": \"2012\" | |
| }, | |
| { | |
| \"doi\": \"http://dx.doi.org/10.1103/physrevb.90.144105\", | |
| \"score\": 0.6172708, | |
| \"normalizedScore\": 13, | |
| \"title\": \"Vacancy formation enthalpy of filled <span class=\\\"aps-inline-formula\\\"><math xmlns=\\\"http://www.w3.org/1998/Math/MathML\\\"><mi>d</mi></math></span>-band noble metals by hybrid functionals\", | |
| \"fullCitation\": \"Weiwei Xing, Peitao Liu, Xiyue Cheng, Haiyang Niu, Hui Ma, Dianzhong Li, Yiyi Li, Xing-Qiu Chen, 2014, 'Vacancy formation enthalpy of filled <span class="aps-inline-formula"><math xmlns="http://www.w3.org/1998/Math/MathML"><mi>d</mi></math></span>-band noble metals by hybrid functionals', <i>Physical Review B</i>, vol. 90, no. 14\", | |
| \"coins\": \"ctx_ver=Z39.88-2004&rft_id=info%3Adoi%2Fhttp%3A%2F%2Fdx.doi.org%2F10.1103%2Fphysrevb.90.144105&rfr_id=info%3Asid%2Fcrossref.org%3Asearch&rft.atitle=Vacancy+formation+enthalpy+of+filled+%3Cspan+class%3D%22aps-inline-formula%22%3E%3Cmath+xmlns%3D%22http%3A%2F%2Fwww.w3.org%2F1998%2FMath%2FMathML%22%3E%3Cmi%3Ed%3C%2Fmi%3E%3C%2Fmath%3E%3C%2Fspan%3E-band+noble+metals+by+hybrid+functionals&rft.jtitle=Physical+Review+B&rft.date=2014&rft.volume=90&rft.issue=14&rft.aufirst=Weiwei&rft.aulast=Xing&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.au=Weiwei+Xing&rft.au=+Peitao+Liu&rft.au=+Xiyue+Cheng&rft.au=+Haiyang+Niu&rft.au=+Hui+Ma&rft.au=+Dianzhong+Li&rft.au=+Yiyi+Li&rft.au=+Xing-Qiu+Chen\", | |
| \"year\": \"2014\" | |
| } | |
| ]"))) | |
| (let (;(json-object-type 'plist) | |
| (json (json-read-from-string data))) | |
| (mapcar (lambda (x) (cons (assoc 'fullCitation x) x)) json)) | |
| )) | |
| (defun isbn-to-bibtex-lead (isbn) | |
| "Search lead.to for ISBN bibtex entry. You have to copy the entry if it is on the page to your bibtex file." | |
| (interactive "sISBN: ") | |
| (browse-url | |
| (format "http://lead.to/amazon/en/?key=%s+&si=all&op=bt&bn=&so=sa&ht=us" isbn))) | |
| (defun isbn-to-bibtex (isbn bibfile) | |
| "Get bibtex entry for ISBN and insert it into BIBFILE unless an | |
| entry with the generated key already exists in the file." | |
| (interactive | |
| (list | |
| (read-input | |
| "ISBN: " | |
| ;; now set initial input | |
| (cond | |
| ;; If region is active and it starts with a number, we use it | |
| ((and (region-active-p) | |
| (s-match "^[0-9]" (buffer-substring (region-beginning) (region-end)))) | |
| (buffer-substring (region-beginning) (region-end))) | |
| ;; if first entry in kill ring starts with a number assume it is an isbn | |
| ;; and use it as the guess | |
| ((if (s-match "^[0-9]" (car kill-ring)) | |
| (car kill-ring))) | |
| ;; type or paste it in | |
| (t | |
| nil))) | |
| (ido-completing-read | |
| "Bibfile: " | |
| (append (f-entries "." (lambda (f) (f-ext? f "bib"))) | |
| org-ref-default-bibliography)))) | |
| (let* ((results (with-current-buffer | |
| (url-retrieve-synchronously | |
| (format | |
| "http://xisbn.worldcat.org/webservices/xid/isbn/%s?method=getMetadata&format=json&fl=*" | |
| isbn)) | |
| (json-read-from-string | |
| (buffer-substring url-http-end-of-headers (point-max))))) | |
| (status (cdr (nth 1 results))) | |
| (metadata (aref (cdar results) 0)) | |
| (new-entry) | |
| (new-key)) | |
| ;; check if we got something | |
| (unless (string= "ok" status) | |
| (error "Status is %s" status)) | |
| ;; construct an alphabetically sorted bibtex entry. I assume ISBN numbers go | |
| ;; with book entries. | |
| (setq new-entry | |
| (concat "\n@book{,\n" | |
| (mapconcat | |
| 'identity | |
| (loop for field in (-sort 'string-lessp (mapcar 'car metadata)) | |
| collect | |
| (format " %s={%s}," field (cdr (assoc field metadata)))) | |
| "\n") | |
| "\n}\n")) | |
| ;; build entry in temp buffer to get the key so we can check for duplicates | |
| (setq new-entry (with-temp-buffer | |
| (insert new-entry) | |
| (org-ref-clean-bibtex-entry) | |
| (setq new-key (bibtex-key-in-head)) | |
| (buffer-string))) | |
| (find-file bibfile) | |
| (goto-char (point-min)) | |
| (when (search-forward new-key nil t) | |
| (beep) | |
| (setq new-key (read-input | |
| (format "%s already exists. Enter new key (C-g to cancel): " new-key) | |
| new-key))) | |
| (goto-char (point-max)) | |
| (insert new-entry) | |
| ;; set key. It is simplest to just replace it, even if it is the same. | |
| (bibtex-beginning-of-entry) | |
| (re-search-forward bibtex-entry-maybe-empty-head) | |
| (if (match-beginning bibtex-key-in-head) | |
| (delete-region (match-beginning bibtex-key-in-head) | |
| (match-end bibtex-key-in-head))) | |
| (insert new-key) | |
| (bibtex-fill-entry) | |
| (save-buffer))) | |
| (provide 'doi-utils) |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ;;; doi-utils.el --- get bibtex entries and pdfs from a DOI | |
| ;; Copyright(C) 2014 John Kitchin | |
| ;; Author: John Kitchin <jkitchin@andrew.cmu.edu> | |
| ;; This file is not currently part of GNU Emacs. | |
| ;; This program is free software; you can redistribute it and/or | |
| ;; modify it under the terms of the GNU General Public License as | |
| ;; published by the Free Software Foundation; either version 2, or (at | |
| ;; your option) any later version. | |
| ;; This program is distributed in the hope that it will be useful, but | |
| ;; WITHOUT ANY WARRANTY; without even the implied warranty of | |
| ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| ;; General Public License for more details. | |
| ;; You should have received a copy of the GNU General Public License | |
| ;; along with this program ; see the file COPYING. If not, write to | |
| ;; the Free Software Foundation, Inc., 59 Temple Place - Suite 330, | |
| ;; Boston, MA 02111-1307, USA. | |
| ;;; Commentary: | |
| ;; | |
| ;; Lisp code to generate and update bibtex entries from a DOI, and to | |
| ;; download pdfs from publisher websites from a DOI. | |
| ;; | |
| ;; Package-Requires: ((org-ref)) | |
| (require 'json) | |
| (defvar *doi-utils-waiting* t | |
| "stores waiting state for url retrieval.") | |
| (defvar *doi-utils-redirect* nil | |
| "stores redirect url from a callback function") | |
| (defun doi-utils-redirect-callback (&optional status) | |
| "callback for url-retrieve to set the redirect" | |
| (when (plist-get status :error) | |
| (signal (car (plist-get status :error)) (cdr(plist-get status :error)))) | |
| (when (plist-get status :redirect) ; is nil if there none | |
| (message "redirects = %s" (plist-get status :redirect)) | |
| (message "*doi-utils-redirect* set to %s" | |
| (setq *doi-utils-redirect* (plist-get status :redirect)))) | |
| ;; we have done our job, so we are not waiting any more. | |
| (setq *doi-utils-waiting* nil)) | |
| (defun doi-utils-get-redirect (doi) | |
| "get redirect url from dx.doi.org/doi" | |
| ;; we are going to wait until the url-retrieve is done | |
| (setq *doi-utils-waiting* t) | |
| ;; start with no redirect. it will be set in the callback. | |
| (setq *doi-utils-redirect* nil) | |
| (url-retrieve | |
| (format "http://dx.doi.org/%s" doi) | |
| 'doi-utils-redirect-callback) | |
| ; I suspect we need to wait here for the asynchronous process to | |
| ; finish. we loop and sleep until the callback says it is done via | |
| ; `*doi-utils-waiting*'. this works as far as i can tell. Before I | |
| ; had to run this a few times to get it to work, which i suspect | |
| ; just gave the first one enough time to finish. | |
| (while *doi-utils-waiting* (sleep-for 0.1))) | |
| (defvar doi-utils-pdf-url-functions nil | |
| "list of functions that return a url to a pdf from a redirect url. Each function takes one argument, the redirect url. The function must return a pdf-url, or nil.") | |
| (defun aps-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://journals.aps.org" *doi-utils-redirect*) | |
| (replace-regexp-in-string "/abstract/" "/pdf/" *doi-utils-redirect*))) | |
| (defun science-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://www.sciencemag.org" *doi-utils-redirect*) | |
| (concat *doi-utils-redirect* ".full.pdf"))) | |
| (defun nature-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://www.nature.com" *doi-utils-redirect*) | |
| (let ((result *doi-utils-redirect*)) | |
| (setq result (replace-regexp-in-string "/full/" "/pdf/" result)) | |
| (replace-regexp-in-string "\.html$" "\.pdf" result)))) | |
| (defun doi-utils-get-wiley-pdf-url (redirect-url) | |
| "wileyscience direct hides the pdf url in html. we get it out here" | |
| (setq *doi-utils-waiting* t) | |
| (url-retrieve redirect-url | |
| (lambda (status) | |
| (beginning-of-buffer) | |
| (re-search-forward "<iframe id=\"pdfDocument\" src=\"\\([^\"]*\\)\"" nil) | |
| (setq *doi-utils-pdf-url* (match-string 1) | |
| *doi-utils-waiting* nil))) | |
| (while *doi-utils-waiting* (sleep-for 0.1)) | |
| *doi-utils-pdf-url*) | |
| (defun wiley-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://onlinelibrary.wiley.com" *doi-utils-redirect*) | |
| (doi-utils-get-wiley-pdf-url (replace-regexp-in-string "/abstract" "/pdf" *doi-utils-redirect*)) | |
| *doi-utils-pdf-url*)) | |
| (defun springer-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://link.springer.com" *doi-utils-redirect*) | |
| (replace-regexp-in-string "/article/" "/content/pdf/" (concat *doi-utils-redirect* ".pdf")))) | |
| (defun acs-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://pubs.acs.org" *doi-utils-redirect*) | |
| (replace-regexp-in-string "/abs/" "/pdf/" *doi-utils-redirect*))) | |
| (defun iop-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://iopscience.iop.org" *doi-utils-redirect*) | |
| (let ((tail (replace-regexp-in-string "^http://iopscience.iop.org" "" *doi-utils-redirect*))) | |
| (concat "http://iopscience.iop.org" tail "/pdf" (replace-regexp-in-string "/" "_" tail) ".pdf")))) | |
| (defun jstor-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://www.jstor.org" *doi-utils-redirect*) | |
| (concat (replace-regexp-in-string "/stable/" "/stable/pdfplus/" *doi-utils-redirect*) ".pdf"))) | |
| (defun aip-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://scitation.aip.org" *doi-utils-redirect*) | |
| ;; get stuff after content | |
| (let (p1 p2 s p3) | |
| (setq p2 (replace-regexp-in-string "^http://scitation.aip.org/" "" *doi-utils-redirect*)) | |
| (setq s (split-string p2 "/")) | |
| (setq p1 (mapconcat 'identity (-remove-at-indices '(0 6) s) "/")) | |
| (setq p3 (concat "/" (nth 0 s) (nth 1 s) "/" (nth 2 s) "/" (nth 3 s))) | |
| (format "http://scitation.aip.org/deliver/fulltext/%s.pdf?itemId=/%s&mimeType=pdf&containerItemId=%s" | |
| p1 p2 p3)))) | |
| (defun tandfonline-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://www.tandfonline.com" *doi-utils-redirect*) | |
| (replace-regexp-in-string "/abs/\\|/full/" "/pdf/" *doi-utils-redirect*))) | |
| (defun ecs-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://jes.ecsdl.org" *doi-utils-redirect*) | |
| (replace-regexp-in-string "\.abstract$" ".full.pdf" *doi-utils-redirect*))) | |
| (defun ecst-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://ecst.ecsdl.org" *doi-utils-redirect*) | |
| (concat *doi-utils-redirect* ".full.pdf"))) | |
| (defun rsc-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://pubs.rsc.org" *doi-utils-redirect*) | |
| (let ((url (downcase *doi-utils-redirect*))) | |
| (setq url (replace-regexp-in-string "articlelanding" "articlepdf" url)) | |
| url))) | |
| (defvar *doi-utils-pdf-url* nil | |
| "stores url to pdf download from a callback function") | |
| (defun doi-utils-get-science-direct-pdf-url (redirect-url) | |
| "science direct hides the pdf url in html. we get it out here" | |
| (setq *doi-utils-waiting* t) | |
| (url-retrieve redirect-url | |
| (lambda (status) | |
| (beginning-of-buffer) | |
| (re-search-forward "pdfurl=\"\\([^\"]*\\)\"" nil t) | |
| (setq *doi-utils-pdf-url* (match-string 1) | |
| *doi-utils-waiting* nil))) | |
| (while *doi-utils-waiting* (sleep-for 0.1)) | |
| *doi-utils-pdf-url*) | |
| (defun science-direct-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://www.sciencedirect.com" *doi-utils-redirect*) | |
| (doi-utils-get-science-direct-pdf-url *doi-utils-redirect*) | |
| *doi-utils-pdf-url*)) | |
| ;; sometimes I get | |
| ;; http://linkinghub.elsevier.com/retrieve/pii/S0927025609004558 | |
| ;; which actually redirect to | |
| ;; http://www.sciencedirect.com/science/article/pii/S0927025609004558 | |
| (defun linkinghub-elsevier-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://linkinghub.elsevier.com/retrieve" *doi-utils-redirect*) | |
| (let ((second-redirect (replace-regexp-in-string | |
| "http://linkinghub.elsevier.com/retrieve" | |
| "http://www.sciencedirect.com/science/article" | |
| *doi-utils-redirect*))) | |
| (message "getting pdf url from %s" second-redirect) | |
| ;(doi-utils-get-science-direct-pdf-url second-redirect) | |
| *doi-utils-pdf-url*))) | |
| (defun pnas-pdf-url (*doi-utils-redirect*) | |
| (when (string-match "^http://www.pnas.org" *doi-utils-redirect*) | |
| (concat *doi-utils-redirect* ".full.pdf?with-ds=yes"))) | |
| (setq doi-utils-pdf-url-functions | |
| (list | |
| 'aps-pdf-url | |
| 'science-pdf-url | |
| 'nature-pdf-url | |
| 'wiley-pdf-url | |
| 'springer-pdf-url | |
| 'acs-pdf-url | |
| 'iop-pdf-url | |
| 'jstor-pdf-url | |
| 'aip-pdf-url | |
| 'science-direct-pdf-url | |
| 'linkinghub-elsevier-pdf-url | |
| 'tandfonline-pdf-url | |
| 'ecs-pdf-url | |
| 'ecst-pdf-url | |
| 'rsc-pdf-url | |
| 'pnas-pdf-url)) | |
| (defun doi-utils-get-pdf-url (doi) | |
| "returns a url to a pdf for the doi if one can be | |
| calculated. Loops through the functions in `doi-utils-pdf-url-functions' | |
| until one is found" | |
| (doi-utils-get-redirect doi) | |
| (unless *doi-utils-redirect* | |
| (error "No redirect found for %s" doi)) | |
| (message "applying functions") | |
| (catch 'pdf-url | |
| (dolist (func doi-utils-pdf-url-functions) | |
| (message "calling %s" func) | |
| (let ((this-pdf-url (funcall func *doi-utils-redirect*))) | |
| (message "t: %s" this-pdf-url) | |
| (when this-pdf-url | |
| (message "found pdf url: %s" this-pdf-url) | |
| (throw 'pdf-url this-pdf-url)))))) | |
| (defun doi-utils-get-bibtex-entry-pdf () | |
| "download pdf for entry at point if the pdf does not already | |
| exist locally. The entry must have a doi. The pdf will be saved | |
| to `org-ref-pdf-directory', by the name %s.pdf where %s is the | |
| bibtex label. Files will not be overwritten. The pdf will be | |
| checked to make sure it is a pdf, and not some html failure | |
| page. you must have permission to access the pdf. We open the pdf | |
| at the end." | |
| (interactive) | |
| (save-excursion | |
| (bibtex-beginning-of-entry) | |
| (let (;; get doi, removing http://dx.doi.org/ if it is there. | |
| (doi (replace-regexp-in-string | |
| "http://dx.doi.org/" "" | |
| (bibtex-autokey-get-field "doi"))) | |
| (key) | |
| (pdf-url) | |
| (pdf-file) | |
| (content)) | |
| ;; get the key and build pdf filename. | |
| (re-search-forward bibtex-entry-maybe-empty-head) | |
| (setq key (match-string bibtex-key-in-head)) | |
| (setq pdf-file (concat org-ref-pdf-directory key ".pdf")) | |
| ;; now get file if needed. | |
| (when (and doi (not (file-exists-p pdf-file))) | |
| (setq pdf-url (doi-utils-get-pdf-url doi)) | |
| (if pdf-url | |
| (progn | |
| (url-copy-file pdf-url pdf-file) | |
| ;; now check if we got a pdf | |
| (with-temp-buffer | |
| (insert-file-contents pdf-file) | |
| ;; PDFS start with %PDF-1.x as the first few characters. | |
| (if (not (string= (buffer-substring 1 6) "%PDF-")) | |
| (progn | |
| (message "%s" (buffer-string)) | |
| (delete-file pdf-file)) | |
| (message "%s saved" pdf-file))) | |
| (when (file-exists-p pdf-file) | |
| (org-open-file pdf-file))) | |
| (message "No pdf-url found for %s at %s" doi *doi-utils-redirect* )) | |
| pdf-file)))) | |
| (defun doi-utils-get-json-metadata (doi) | |
| "Try to get json metadata for DOI. Open the DOI in a browser if we do not get it." | |
| (let ((url-request-method "GET") | |
| (url-mime-accept-string "application/citeproc+json") | |
| (json-object-type 'plist) | |
| (json-data)) | |
| (with-current-buffer | |
| (url-retrieve-synchronously | |
| (concat "http://dx.doi.org/" doi)) | |
| (setq json-data (buffer-substring url-http-end-of-headers (point-max))) | |
| (if (string-match "Resource not found" json-data) | |
| (progn | |
| (browse-url (concat "http://dx.doi.org/" doi)) | |
| (error "Resource not found. Opening website.")) | |
| (json-read-from-string json-data))))) | |
| (defun doi-utils-expand-template (s) | |
| "expand a template containing %{} with the eval of its contents" | |
| (replace-regexp-in-string "%{\\([^}]+\\)}" | |
| (lambda (arg) | |
| (let ((sexp (substring arg 2 -1))) | |
| (format "%s" (eval (read sexp))))) s)) | |
| (defun doi-utils-doi-to-bibtex-string (doi) | |
| "return a bibtex entry as a string for the doi. Only articles are currently supported" | |
| (let (type | |
| results | |
| author | |
| title | |
| booktitle | |
| journal | |
| year | |
| volume | |
| number | |
| pages | |
| month | |
| url | |
| json-data) | |
| (setq results (doi-utils-get-json-metadata doi) | |
| json-data (format "%s" results) | |
| type (plist-get results :type) | |
| author (mapconcat (lambda (x) (concat (plist-get x :given) " " (plist-get x :family))) | |
| (plist-get results :author) " and ") | |
| title (plist-get results :title) | |
| journal (plist-get results :container-title) | |
| volume (plist-get results :volume) | |
| issue (plist-get results :issue) | |
| year (elt (elt (plist-get (plist-get results :issued) :date-parts) 0) 0) | |
| pages (plist-get results :page) | |
| doi (plist-get results :DOI) | |
| url (plist-get results :URL)) | |
| (cond | |
| ((or (string= type "journal-article") (string= type "article-journal")) | |
| (doi-utils-expand-template "@article{, | |
| author = {%{author}}, | |
| title = {%{title}}, | |
| journal = {%{journal}}, | |
| year = {%{year}}, | |
| volume = {%{volume}}, | |
| number = {%{issue}}, | |
| pages = {%{pages}}, | |
| doi = {%{doi}}, | |
| url = {%{url}}, | |
| }")) | |
| ((string= type "proceedings-article") | |
| (setq booktitle (plist-get results :container-title)) | |
| (doi-utils-expand-template "@inproceedings{, | |
| author = {%{author}}, | |
| title = {%{title}}, | |
| booktitle = {%{booktitle}}, | |
| year = {%{year}}, | |
| month = {%{month}}, | |
| pages = {%{pages}}, | |
| doi = {%{doi}}, | |
| url = {%{url}}, | |
| }")) | |
| (t (message-box "%s not supported yet." type))))) | |
| (defun doi-utils-insert-bibtex-entry-from-doi (doi) | |
| "insert bibtex entry from a doi. Also cleans entry using | |
| org-ref, and tries to download the corresponding pdf." | |
| (interactive "sDOI :") | |
| (insert (doi-utils-doi-to-bibtex-string doi)) | |
| (backward-char) | |
| (if (bibtex-key-in-head nil) | |
| (org-ref-clean-bibtex-entry t) | |
| (org-ref-clean-bibtex-entry)) | |
| ;; try to get pdf | |
| (doi-utils-get-bibtex-entry-pdf) | |
| (save-selected-window | |
| (org-ref-open-bibtex-notes))) | |
| (defun doi-utils-add-bibtex-entry-from-doi (doi bibfile) | |
| "Add entry to end of a file in in the current directory ending | |
| with .bib or in `org-ref-default-bibliography'. If you have an | |
| active region that starts like a DOI, that will be the initial | |
| prompt. If no region is selected and the first entry of the | |
| kill-ring starts like a DOI, then that is the intial | |
| prompt. Otherwise, you have to type or pste in a DOI." | |
| (interactive | |
| (list (read-input "DOI: " | |
| ;; now set initial input | |
| (cond | |
| ;; If region is active and it starts like a doi we want it. | |
| ((and (region-active-p) | |
| (s-match "^10" (buffer-substring | |
| (region-beginning) | |
| (region-end)))) | |
| (buffer-substring (region-beginning) (region-end))) | |
| ;; if the first entry in the kill-ring looks | |
| ;; like a DOI, let's use it. | |
| ((if (s-match "^10" (car kill-ring)) | |
| (car kill-ring))) | |
| ;; otherwise, we have no initial input. You | |
| ;; will have to type it in. | |
| (t | |
| nil))) | |
| ;; now get the bibfile to add it to | |
| (ido-completing-read | |
| "Bibfile: " | |
| (append (f-entries "." (lambda (f) (f-ext? f "bib"))) | |
| org-ref-default-bibliography)))) | |
| ;; Wrap in save-window-excursion to restore your window arrangement after this | |
| ;; is done. | |
| (save-window-excursion | |
| (find-file bibfile) | |
| ;; Check if the doi already exists | |
| (goto-char (point-min)) | |
| (if (search-forward doi nil t) | |
| (message "%s is already in this file" doi) | |
| (end-of-buffer) | |
| (insert "\n\n") | |
| (doi-utils-insert-bibtex-entry-from-doi doi) | |
| (save-buffer)))) | |
| (defun bibtex-set-field (field value &optional nodelim) | |
| "set field to value in bibtex file. create field if it does not exist" | |
| (interactive "sfield: \nsvalue: ") | |
| (bibtex-beginning-of-entry) | |
| (let ((found)) | |
| (if (setq found (bibtex-search-forward-field field t)) | |
| ;; we found a field | |
| (progn | |
| (goto-char (car (cdr found))) | |
| (when value | |
| (bibtex-kill-field) | |
| (bibtex-make-field field nil nil nodelim) | |
| (backward-char) | |
| (insert value))) | |
| ;; make a new field | |
| (message "new field being made") | |
| (bibtex-beginning-of-entry) | |
| (forward-line) (beginning-of-line) | |
| (bibtex-next-field nil) | |
| (forward-char) | |
| (bibtex-make-field field nil nil nodelim) | |
| (backward-char) | |
| (insert value)))) | |
| (defun plist-get-keys (plist) | |
| "return keys in a plist" | |
| (loop | |
| for key in results by #'cddr collect key)) | |
| (defun doi-utils-update-bibtex-entry-from-doi (doi) | |
| "update fields in a bibtex entry from the doi. Every field will be updated, so previous changes will be lost." | |
| (interactive (list | |
| (or (replace-regexp-in-string "http://dx.doi.org/" "" (bibtex-autokey-get-field "doi")) | |
| (read-string "DOI: ")))) | |
| (let* ((results (doi-utils-get-json-metadata doi)) | |
| (type (plist-get results :type)) | |
| (author (mapconcat | |
| (lambda (x) (concat (plist-get x :given) | |
| " " (plist-get x :family))) | |
| (plist-get results :author) " and ")) | |
| (title (plist-get results :title)) | |
| (journal (plist-get results :container-title)) | |
| (year (format "%s" | |
| (elt | |
| (elt | |
| (plist-get | |
| (plist-get results :issued) :date-parts) 0) 0))) | |
| (volume (plist-get results :volume)) | |
| (number (or (plist-get results :issue) "")) | |
| (pages (or (plist-get results :page) "")) | |
| (url (or (plist-get results :URL) "")) | |
| (doi (plist-get results :DOI))) | |
| ;; map the json fields to bibtex fields. The code each field is mapped to is evaluated. | |
| (setq mapping '((:author . (bibtex-set-field "author" author)) | |
| (:title . (bibtex-set-field "title" title)) | |
| (:container-title . (bibtex-set-field "journal" journal)) | |
| (:issued . (bibtex-set-field "year" year)) | |
| (:volume . (bibtex-set-field "volume" volume)) | |
| (:issue . (bibtex-set-field "number" number)) | |
| (:page . (bibtex-set-field "pages" pages)) | |
| (:DOI . (bibtex-set-field "doi" doi)) | |
| (:URL . (bibtex-set-field "url" url)))) | |
| ;; now we have code to run for each entry. we map over them and evaluate the code | |
| (mapcar | |
| (lambda (key) | |
| (eval (cdr (assoc key mapping)))) | |
| (plist-get-keys results))) | |
| ; reclean entry, but keep key if it exists. | |
| (if (bibtex-key-in-head) | |
| (org-ref-clean-bibtex-entry t) | |
| (org-ref-clean-bibtex-entry))) | |
| (defun doi-utils-wos (doi) | |
| "Open Web of Science entry for DOI" | |
| (interactive "sDOI: ") | |
| (browse-url | |
| (format | |
| "http://ws.isiknowledge.com/cps/openurl/service?url_ver=Z39.88-2004&rft_id=info:doi/%s" doi))) | |
| (defun doi-utils-wos-citing (doi) | |
| "Open Web of Science citing articles entry. May be empty if none are found" | |
| (interactive "sDOI: ") | |
| (browse-url | |
| (concat | |
| "http://ws.isiknowledge.com/cps/openurl/service?url_ver=Z39.88-2004&rft_id=info%3Adoi%2F" | |
| doi | |
| "&svc_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Asch_svc&svc.citing=yes"))) | |
| (defun doi-utils-wos-related (doi) | |
| "Open Web of Science related articles page." | |
| (interactive "sDOI: ") | |
| (browse-url | |
| (concat "http://ws.isiknowledge.com/cps/openurl/service?url_ver=Z39.88-2004&rft_id=info%3Adoi%2F" | |
| doi | |
| "&svc_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Asch_svc&svc.related=yes"))) | |
| (defun doi-utils-open (doi) | |
| (interactive "sDOI: ") | |
| (browse-url (concat "http://dx.doi.org/" doi))) | |
| (defun doi-utils-open-bibtex (doi) | |
| "Search through `reftex-default-bibliography' for DOI." | |
| (interactive "sDOI: ") | |
| (catch 'file | |
| (dolist (f reftex-default-bibliography) | |
| (find-file f) | |
| (when (search-forward doi (point-max) t) | |
| (bibtex-beginning-of-entry) | |
| (throw 'file t))))) | |
| (defun doi-utils-crossref (doi) | |
| "Search DOI in CrossRef." | |
| (interactive "sDOI: ") | |
| (browse-url | |
| (format | |
| "http://search.crossref.org/?q=%s" doi))) | |
| (defun doi-utils-google-scholar (doi) | |
| "Google scholar the word at point or selection." | |
| (interactive "sDOI: ") | |
| (browse-url | |
| (format | |
| "http://scholar.google.com/scholar?q=%s" doi))) | |
| (defun doi-utils-pubmed (doi) | |
| "Pubmed the word at point or selection." | |
| (interactive "sDOI: ") | |
| (browse-url | |
| (format | |
| "http://www.ncbi.nlm.nih.gov/pubmed/?term=%s" | |
| (url-hexify-string doi)))) | |
| (defvar doi-link-menu-funcs '() | |
| "Functions to run in doi menu. Each entry is a list of (key menu-name function). | |
| The function must take one argument, the doi.") | |
| (setq doi-link-menu-funcs | |
| '(("o" "pen" doi-utils-open) | |
| ("w" "os" doi-utils-wos) | |
| ("c" "iting articles" doi-utils-wos-citing) | |
| ("r" "elated articles" doi-utils-wos-related) | |
| ("s" "Google Scholar" doi-utils-google-scholar) | |
| ("f" "CrossRef" doi-utils-crossref) | |
| ("p" "ubmed" doi-utils-pubmed) | |
| ("b" "open in bibtex" doi-utils-open-bibtex) | |
| ("g" "et bibtex entry" doi-utils-add-bibtex-entry-from-doi))) | |
| (defun doi-link-menu (link-string) | |
| "Generate the link menu message, get choice and execute it. | |
| Options are stored in `doi-link-menu-funcs'." | |
| (interactive) | |
| (message | |
| (concat | |
| (mapconcat | |
| (lambda (tup) | |
| (concat "[" (elt tup 0) "]" | |
| (elt tup 1) " ")) | |
| doi-link-menu-funcs "") ": ")) | |
| (let* ((input (read-char-exclusive)) | |
| (choice (assoc | |
| (char-to-string input) doi-link-menu-funcs))) | |
| (when choice | |
| (funcall | |
| (elt | |
| choice | |
| 2) | |
| link-string)))) | |
| (org-add-link-type | |
| "doi" | |
| 'doi-link-menu) | |
| (defun doi-utils-crossref-citation-query () | |
| "Query Crossref with the title of the bibtex entry at point to | |
| get a list of possible matches. This opens a helm buffer to | |
| select an entry. The default action inserts a doi and url field | |
| in the bibtex entry at point. The second action opens the doi | |
| url. If there is already a doi field, the function raises an | |
| error." | |
| (interactive) | |
| (bibtex-beginning-of-entry) | |
| (let* ((entry (bibtex-parse-entry)) | |
| (json-string) | |
| (json-data) | |
| (doi)) | |
| (unless (string= ""(reftex-get-bib-field "doi" entry)) | |
| (error "Entry already has a doi field")) | |
| (with-current-buffer | |
| (url-retrieve-synchronously | |
| (concat | |
| "http://search.crossref.org/dois?q=" | |
| (url-hexify-string (org-ref-bib-citation)))) | |
| (setq json-string (buffer-substring url-http-end-of-headers (point-max))) | |
| (setq json-data (json-read-from-string json-string))) | |
| (let* ((name (format "Crossref hits for %s" (org-ref-bib-citation))) | |
| (helm-candidates (mapcar (lambda (x) | |
| (cons | |
| (concat | |
| (cdr (assoc 'fullCitation x)) | |
| " " | |
| (cdr (assoc 'doi x))) | |
| (cdr (assoc 'doi x)))) | |
| json-data)) | |
| (source `((name . ,name) | |
| (candidates . ,helm-candidates) | |
| ;; just return the candidate | |
| (action . (("Insert doi and url field" . (lambda (doi) | |
| (bibtex-make-field "doi") | |
| (backward-char) | |
| ;; crossref returns doi url, but I prefer only a doi for the doi field | |
| (insert (replace-regexp-in-string "^http://dx.doi.org/" "" doi)) | |
| (when (string= ""(reftex-get-bib-field "url" entry)) | |
| (bibtex-make-field "url") | |
| (backward-char) | |
| (insert doi)))) | |
| ("Open url" . (lambda (doi) | |
| (browse-url doi)))))))) | |
| (helm :sources '(source))))) | |
| (defun doi-utils-add-entry-from-crossref-query (query bibtex-file) | |
| (interactive (list | |
| (read-input | |
| "Query: " | |
| ;; now set initial input | |
| (cond | |
| ;; If region is active assume we want it | |
| ((region-active-p) | |
| (replace-regexp-in-string | |
| "\n" " " | |
| (buffer-substring (region-beginning) (region-end)))) | |
| ;; type or paste it in | |
| (t | |
| nil))) | |
| (ido-completing-read | |
| "Bibfile: " | |
| (append (f-entries "." (lambda (f) (f-ext? f "bib"))) | |
| org-ref-default-bibliography)))) | |
| (let* ((json-string) | |
| (json-data) | |
| (doi)) | |
| (with-current-buffer | |
| (url-retrieve-synchronously | |
| (concat | |
| "http://search.crossref.org/dois?q=" | |
| (url-hexify-string query))) | |
| (setq json-string (buffer-substring url-http-end-of-headers (point-max))) | |
| (setq json-data (json-read-from-string json-string))) | |
| (let* ((name (format "Crossref hits for %s" | |
| ;; remove carriage returns. they cause problems in helm. | |
| (replace-regexp-in-string "\n" " " query))) | |
| (helm-candidates (mapcar (lambda (x) | |
| (cons | |
| (concat | |
| (cdr (assoc 'fullCitation x)) | |
| " " | |
| (cdr (assoc 'doi x))) | |
| (cdr (assoc 'doi x)))) | |
| json-data)) | |
| (source `((name . ,name) | |
| (candidates . ,helm-candidates) | |
| ;; just return the candidate | |
| (action . (("Insert bibtex entry" . (lambda (doi) | |
| (doi-utils-add-bibtex-entry-from-doi | |
| (replace-regexp-in-string "^http://dx.doi.org/" "" doi) ,bibtex-file))) | |
| ("Open url" . (lambda (doi) | |
| (browse-url doi)))))))) | |
| (helm :sources '(source))))) | |
| (defun isbn-to-bibtex-lead (isbn) | |
| "Search lead.to for ISBN bibtex entry. You have to copy the entry if it is on the page to your bibtex file." | |
| (interactive "sISBN: ") | |
| (browse-url | |
| (format "http://lead.to/amazon/en/?key=%s+&si=all&op=bt&bn=&so=sa&ht=us" isbn))) | |
| (defun isbn-to-bibtex (isbn bibfile) | |
| "Get bibtex entry for ISBN and insert it into BIBFILE unless an | |
| entry with the generated key already exists in the file." | |
| (interactive | |
| (list | |
| (read-input | |
| "ISBN: " | |
| ;; now set initial input | |
| (cond | |
| ;; If region is active and it starts with a number, we use it | |
| ((and (region-active-p) | |
| (s-match "^[0-9]" (buffer-substring (region-beginning) (region-end)))) | |
| (buffer-substring (region-beginning) (region-end))) | |
| ;; if first entry in kill ring starts with a number assume it is an isbn | |
| ;; and use it as the guess | |
| ((if (s-match "^[0-9]" (car kill-ring)) | |
| (car kill-ring))) | |
| ;; type or paste it in | |
| (t | |
| nil))) | |
| (ido-completing-read | |
| "Bibfile: " | |
| (append (f-entries "." (lambda (f) (f-ext? f "bib"))) | |
| org-ref-default-bibliography)))) | |
| (let* ((results (with-current-buffer | |
| (url-retrieve-synchronously | |
| (format | |
| "http://xisbn.worldcat.org/webservices/xid/isbn/%s?method=getMetadata&format=json&fl=*" | |
| isbn)) | |
| (json-read-from-string | |
| (buffer-substring url-http-end-of-headers (point-max))))) | |
| (status (cdr (nth 1 results))) | |
| (metadata (aref (cdar results) 0)) | |
| (new-entry) | |
| (new-key)) | |
| ;; check if we got something | |
| (unless (string= "ok" status) | |
| (error "Status is %s" status)) | |
| ;; construct an alphabetically sorted bibtex entry. I assume ISBN numbers go | |
| ;; with book entries. | |
| (setq new-entry | |
| (concat "\n@book{,\n" | |
| (mapconcat | |
| 'identity | |
| (loop for field in (-sort 'string-lessp (mapcar 'car metadata)) | |
| collect | |
| (format " %s={%s}," field (cdr (assoc field metadata)))) | |
| "\n") | |
| "\n}\n")) | |
| ;; build entry in temp buffer to get the key so we can check for duplicates | |
| (setq new-entry (with-temp-buffer | |
| (insert new-entry) | |
| (org-ref-clean-bibtex-entry) | |
| (setq new-key (bibtex-key-in-head)) | |
| (buffer-string))) | |
| (find-file bibfile) | |
| (goto-char (point-min)) | |
| (when (search-forward new-key nil t) | |
| (beep) | |
| (setq new-key (read-input | |
| (format "%s already exists. Enter new key (C-g to cancel): " new-key) | |
| new-key))) | |
| (goto-char (point-max)) | |
| (insert new-entry) | |
| ;; set key. It is simplest to just replace it, even if it is the same. | |
| (bibtex-beginning-of-entry) | |
| (re-search-forward bibtex-entry-maybe-empty-head) | |
| (if (match-beginning bibtex-key-in-head) | |
| (delete-region (match-beginning bibtex-key-in-head) | |
| (match-end bibtex-key-in-head))) | |
| (insert new-key) | |
| (bibtex-fill-entry) | |
| (save-buffer))) | |
| (provide 'doi-utils) |
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