informationsea

FROM centos:7
RUN yum update -y
RUN yum install -y epel-release
RUN yum install -y gcc gcc-c++ make cmake3 cmake fuse-devel openssl-devel zlib-devel bzip2-devel chrpath patchelf
RUN mkdir -p /build
WORKDIR /build
RUN curl -OL https://libzip.org/download/libzip-1.5.1.tar.gz
RUN tar xzf libzip-1.5.1.tar.gz
WORKDIR /build/libzip-1.5.1
ENV PKG_CONFIG_PATH=/usr/local/lib64/pkgconfig:/usr/lib64/pkgconfig LD_LIBRARY_PATH=/usr/local/lib64:/usr/lib64

informationsea

#!/usr/bin/env python3
# -*- coding: utf-8 -*-

import argparse
import cyvcf2
import pyfaidx
import sys

def _main():
    parser = argparse.ArgumentParser(description="Simple Repeat Variant Detector")

informationsea

#!/usr/bin/env python
# -*- coding: utf-8 -*-
 
import argparse
import ipaddress
import itertools
import subprocess
import tempfile
import os
import signal

informationsea

function add_path() {

    if [ ! -d $1 ];then
        return
    fi

    NEWPREFIX=$1

    case ":$PATH:" in
        *":$NEWPREFIX/bin:"*) return;;

informationsea

#!/usr/bin/env python3
# -*- coding: utf-8 -*-

import argparse
import csv
import sqlite3
import sys
import datetime
import pytz
import collections

informationsea

informationsea

#!/usr/bin/env python
# -*- coding: utf-8 -*-

import argparse
import csv
import sqlite3
import sys
import datetime
import pytz
import collections

informationsea

#include <Windows.h>

int main()
{
  /* https://msdn.microsoft.com/en-us/library/windows/desktop/aa376869(v=vs.85).aspx */
  LockWorkStation();
  /* https://msdn.microsoft.com/en-us/library/windows/desktop/ms644944(v=vs.85).aspx */
  PostMessage(HWND_BROADCAST, WM_SYSCOMMAND, SC_MONITORPOWER, 2);
  return 0;
}

informationsea

diff --git a/configure.ac b/configure.ac
index cd4d1c0..fcc96d2 100644
--- a/configure.ac
+++ b/configure.ac
@@ -5123,7 +5123,7 @@ case "$opsys" in
    ## only costs about 1.5K of wasted binary space.
    headerpad_extra=1000
    if test "$HAVE_NS" = "yes"; then
-     libs_nsgui="-framework AppKit"
+     libs_nsgui="-framework AppKit -framework Carbon"

informationsea

    function qsub-one () {
        SHOWHELP="false"
        GRID_OPTION=("-cwd")
        GRID_SHELL="/bin/zsh"
        
        while getopts p:n:m:hs: OPT; do
            case $OPT in
                "h") SHOWHELP="true";;
                "n") GRID_NAME="$OPTARG";;
                "m") GRID_OPTION=("${GRID_OPTION[@]}" "-l" "s_vmem=$OPTARG,mem_req=$OPTARG");;