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#include <stdio.h>
#include <string.h>
#include <Carbon/Carbon.h>

int main(int nargs, char** argv) {
    if (nargs != 2) {
        fprintf(stderr, "%s (on|off)\n", argv[0]);
        return 1;
    }
    

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FROM centos:7 AS download-wine
WORKDIR /download
RUN curl -OL https://dl.winehq.org/wine/source/5.x/wine-5.4.tar.xz
RUN tar xJf wine-5.4.tar.xz

FROM centos:7
RUN yum update -y
RUN yum install samba-winbind-clients -y
RUN yum -y groupinstall base "Development tools" --setopt=group_package_types=mandatory,default,optional
RUN yum install -y libjpeg-turbo-devel libtiff-devel freetype-devel glibc-devel.{i686,x86_64} libgcc.{i686,x86_64} \

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FROM centos:7 AS download-cmake
RUN mkdir -p /download
WORKDIR /download
RUN curl -OL https://github.com/Kitware/CMake/releases/download/v3.15.5/cmake-3.15.5.tar.gz
RUN tar xzf cmake-3.15.5.tar.gz

FROM centos:7 AS build-cmake
RUN yum update -y
RUN yum install -y gcc gcc-c++ make zlib-devel curl-devel openssl-devel libarchive-devel ncurses-devel readline-devel
COPY --from=download-cmake /download/cmake-3.15.5 /src/cmake-3.15.5

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FROM centos:7 AS download-cmake
RUN mkdir -p /download
WORKDIR /download
RUN curl -OL https://github.com/Kitware/CMake/releases/download/v3.17.0/cmake-3.17.0.tar.gz
RUN tar xzf cmake-3.17.0.tar.gz

FROM centos:7 AS build-cmake
RUN yum update -y
RUN yum install -y gcc gcc-c++ make zlib-devel curl-devel openssl-devel libarchive-devel ncurses-devel readline-devel
COPY --from=download-cmake /download/cmake-3.17.0 /src/cmake-3.17.0

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FROM centos:7 AS download-llvm
ENV LLVM_VERSION 9.0.1
RUN mkdir -p /download
WORKDIR /download
RUN curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/llvm-${LLVM_VERSION}.src.tar.xz &&\
    curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/clang-${LLVM_VERSION}.src.tar.xz &&\
    curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/compiler-rt-${LLVM_VERSION}.src.tar.xz &&\
    curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/libcxx-${LLVM_VERSION}.src.tar.xz &&\
    curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/libcxxabi-${LLVM_VERSION}.src.tar.xz &&\
    curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/libunwind-${LLVM_VERSION}.src.tar.xz &&\

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FROM centos:7
RUN yum update -y
RUN yum install -y tcsh gcc gcc-c++ make autoconf automake libtool openssl-devel memkind-devel libdb-devel ncurses-devel pam-devel libXmu-devel libXpm-devel motif-devel hwloc-devel ant ant-nodeps javacc junit java-1.7.0-openjdk-devel
RUN mkdir -p build
WORKDIR /build
RUN curl -OL https://github.com/son-of-gridengine/sge/archive/819.tar.gz && tar xzf 819.tar.gz
WORKDIR /build/sge-819/source
RUN sh scripts/bootstrap.sh
RUN ./aimk -no-herd -pam
RUN ./aimk -man

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<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE KeyboardMappingScheme>
<!-- Written by Qt Creator 4.8.0, 2018-12-15T21:05:52. -->
<mapping>
 <shortcut id="Perforce.DiffCurrent"/>
 <shortcut id="ModelEditor.Action.Explorer.OpenDiagram"/>
 <shortcut id="Macros.ExecuteLastMacro">
  <key value="Alt+R"/>
 </shortcut>
 <shortcut id="Macros.EndMacro">

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VritualBox Guest Addition 5.2.22 Patch for Cent OS 7.6

Original Patch

https://www.virtualbox.org/attachment/ticket/18093/vbox_video_build_rhel76_fix.patch

How to apply

1. Download vboxvide.patch from below
2. Ensure newline is CR LF
3. Change directory to /opt/VBoxGuestAdditions-5.2.22/src/vboxguest-5.2.22/vboxvideo

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FROM centos:7
RUN yum update -y
RUN yum install -y epel-release
RUN yum install -y gcc gcc-c++ make cmake3 cmake fuse-devel openssl-devel zlib-devel bzip2-devel chrpath patchelf
RUN mkdir -p /build
WORKDIR /build
RUN curl -OL https://libzip.org/download/libzip-1.5.1.tar.gz
RUN tar xzf libzip-1.5.1.tar.gz
WORKDIR /build/libzip-1.5.1
ENV PKG_CONFIG_PATH=/usr/local/lib64/pkgconfig:/usr/lib64/pkgconfig LD_LIBRARY_PATH=/usr/local/lib64:/usr/lib64

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#!/usr/bin/env python3
# -*- coding: utf-8 -*-

import argparse
import cyvcf2
import pyfaidx
import sys

def _main():
    parser = argparse.ArgumentParser(description="Simple Repeat Variant Detector")