| FROM centos:7 AS download-wine | |
| WORKDIR /download | |
| RUN curl -OL https://dl.winehq.org/wine/source/5.x/wine-5.4.tar.xz | |
| RUN tar xJf wine-5.4.tar.xz | |
| FROM centos:7 | |
| RUN yum update -y | |
| RUN yum install samba-winbind-clients -y | |
| RUN yum -y groupinstall base "Development tools" --setopt=group_package_types=mandatory,default,optional | |
| RUN yum install -y libjpeg-turbo-devel libtiff-devel freetype-devel glibc-devel.{i686,x86_64} libgcc.{i686,x86_64} \ |
| FROM centos:7 AS download-cmake | |
| RUN mkdir -p /download | |
| WORKDIR /download | |
| RUN curl -OL https://github.com/Kitware/CMake/releases/download/v3.15.5/cmake-3.15.5.tar.gz | |
| RUN tar xzf cmake-3.15.5.tar.gz | |
| FROM centos:7 AS build-cmake | |
| RUN yum update -y | |
| RUN yum install -y gcc gcc-c++ make zlib-devel curl-devel openssl-devel libarchive-devel ncurses-devel readline-devel | |
| COPY --from=download-cmake /download/cmake-3.15.5 /src/cmake-3.15.5 |
| FROM centos:7 AS download-cmake | |
| RUN mkdir -p /download | |
| WORKDIR /download | |
| RUN curl -OL https://github.com/Kitware/CMake/releases/download/v3.17.0/cmake-3.17.0.tar.gz | |
| RUN tar xzf cmake-3.17.0.tar.gz | |
| FROM centos:7 AS build-cmake | |
| RUN yum update -y | |
| RUN yum install -y gcc gcc-c++ make zlib-devel curl-devel openssl-devel libarchive-devel ncurses-devel readline-devel | |
| COPY --from=download-cmake /download/cmake-3.17.0 /src/cmake-3.17.0 |
| FROM centos:7 AS download-llvm | |
| ENV LLVM_VERSION 9.0.1 | |
| RUN mkdir -p /download | |
| WORKDIR /download | |
| RUN curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/llvm-${LLVM_VERSION}.src.tar.xz &&\ | |
| curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/clang-${LLVM_VERSION}.src.tar.xz &&\ | |
| curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/compiler-rt-${LLVM_VERSION}.src.tar.xz &&\ | |
| curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/libcxx-${LLVM_VERSION}.src.tar.xz &&\ | |
| curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/libcxxabi-${LLVM_VERSION}.src.tar.xz &&\ | |
| curl -OL https://github.com/llvm/llvm-project/releases/download/llvmorg-${LLVM_VERSION}/libunwind-${LLVM_VERSION}.src.tar.xz &&\ |
| FROM centos:7 | |
| RUN yum update -y | |
| RUN yum install -y tcsh gcc gcc-c++ make autoconf automake libtool openssl-devel memkind-devel libdb-devel ncurses-devel pam-devel libXmu-devel libXpm-devel motif-devel hwloc-devel ant ant-nodeps javacc junit java-1.7.0-openjdk-devel | |
| RUN mkdir -p build | |
| WORKDIR /build | |
| RUN curl -OL https://github.com/son-of-gridengine/sge/archive/819.tar.gz && tar xzf 819.tar.gz | |
| WORKDIR /build/sge-819/source | |
| RUN sh scripts/bootstrap.sh | |
| RUN ./aimk -no-herd -pam | |
| RUN ./aimk -man |
| <?xml version="1.0" encoding="UTF-8"?> | |
| <!DOCTYPE KeyboardMappingScheme> | |
| <!-- Written by Qt Creator 4.8.0, 2018-12-15T21:05:52. --> | |
| <mapping> | |
| <shortcut id="Perforce.DiffCurrent"/> | |
| <shortcut id="ModelEditor.Action.Explorer.OpenDiagram"/> | |
| <shortcut id="Macros.ExecuteLastMacro"> | |
| <key value="Alt+R"/> | |
| </shortcut> | |
| <shortcut id="Macros.EndMacro"> |
https://www.virtualbox.org/attachment/ticket/18093/vbox_video_build_rhel76_fix.patch
vboxvide.patch from belowCR LF/opt/VBoxGuestAdditions-5.2.22/src/vboxguest-5.2.22/vboxvideo
| FROM centos:7 | |
| RUN yum update -y | |
| RUN yum install -y epel-release | |
| RUN yum install -y gcc gcc-c++ make cmake3 cmake fuse-devel openssl-devel zlib-devel bzip2-devel chrpath patchelf | |
| RUN mkdir -p /build | |
| WORKDIR /build | |
| RUN curl -OL https://libzip.org/download/libzip-1.5.1.tar.gz | |
| RUN tar xzf libzip-1.5.1.tar.gz | |
| WORKDIR /build/libzip-1.5.1 | |
| ENV PKG_CONFIG_PATH=/usr/local/lib64/pkgconfig:/usr/lib64/pkgconfig LD_LIBRARY_PATH=/usr/local/lib64:/usr/lib64 |
| #!/usr/bin/env python3 | |
| # -*- coding: utf-8 -*- | |
| import argparse | |
| import cyvcf2 | |
| import pyfaidx | |
| import sys | |
| def _main(): | |
| parser = argparse.ArgumentParser(description="Simple Repeat Variant Detector") |
| #!/usr/bin/env python | |
| # -*- coding: utf-8 -*- | |
| import argparse | |
| import ipaddress | |
| import itertools | |
| import subprocess | |
| import tempfile | |
| import os | |
| import signal |