infusini

INFO: CPU: ip-172-31-8-59
INFO: Crux version: 3.2-dcf56a2
INFO: Wed May 20 22:31:23 UTC 2020
COMMAND LINE: /home/ubuntu/crux percolator --overwrite T --pepxml-output T --protein F --decoy-xml-output T --subset-max-train 1000000 --klammer F --maxiter 10 --output-dir /home/ubuntu/data/out/ --picked-protein /home/ubuntu/data/HomoSapiens.fasta --protein-enzyme trypsin --search-input concatenated --verbosity 30 /home/ubuntu/data/1a7d100b-b01e-441e-8acf-2a78fd92c151.comet.target.pin
INFO: Beginning percolator.
INFO: Percolator version 3.04.nightly-3-33a4c8e-dirty, Build Date Feb  5 2020 17:29:30
INFO: Copyright (c) 2006-9 University of Washington. All rights reserved.
INFO: Written by Lukas Käll (lukall@u.washington.edu) in the
INFO: Department of Genome Sciences at the University of Washington.
INFO: Issued command:

infusini

# Crux parameter file (generated by Crux version 3.2-6db67f5)
# Full documentation available at http://cruxtoolkit.sourceforge.net/
# comet_version 2016.01 rev. 1
# Everything following the '#' symbol is treated as a comment.

# Specifies the maximum charge state feature.  When set to zero, use the maximum
# observed charge state.
# Available for make-pin and percolator.
max-charge-feature=0

infusini

#!/usr/bin/env python
# -*- coding: utf-8 -*-

"""
Remove output from existing Jupyter Notebooks.
Modified from remove_output by Minrk, damianavila, gabraganca.

References: 
    [0]: https://github.com/jupyter/nbformat
    [1]: http://nbformat.readthedocs.org/en/latest/index.html