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inodb/ensemble_rest.md

Created August 27, 2015 22:57
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Get region from ensembl rest and translate one-liner
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ensemble_rest.md

Ensembl REST API

Get region from ensembl REST and translate in one line

curl 'http://grch37.rest.ensembl.org/sequence/region/human/17:41267755:41267763:-1' -H 'Content-type:text/x-fasta' \
    | python <(echo -e "import sys\nfrom Bio import SeqIO\nprint [r.seq.translate() for r in SeqIO.to_dict(SeqIO.parse(sys.stdin, 'fasta')).values()][0]")
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