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inutano/iterate_wf.sh

Created June 30, 2018 20:18
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iterate_wf.sh
#!/bin/sh
find ${HOME}/.pitagora-cwl/workflows -name 'README.md' | \
xargs -I{} grep curl {} | \
awk '{ print $NF }' | \
tr -d '"' | \
while read wf; do
for i in $(seq 10); do
rm -fr ${HOME}/work/*${wf}*
bash ${HOME}/.pitagora-cwl/test/bin/run-cwl ${wf}
rm -fr /tmp/tmp*
done
done
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