Skip to content

Instantly share code, notes, and snippets.

@inutano
Last active April 22, 2022 07:03
Show Gist options
  • Save inutano/af09152d85d0df9ea1e7f0bbfa639304 to your computer and use it in GitHub Desktop.
Save inutano/af09152d85d0df9ea1e7f0bbfa639304 to your computer and use it in GitHub Desktop.
reference: # type "File"
class: File
format: http://edamontology.org/format_1929
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa
secondaryFiles:
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.dict
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.amb
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.ann
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.autosomal.interval_list
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.bwt
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.chrX.interval_list
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.chrY.interval_list
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.fai
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.pac
- class: File
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/hs37d5.release-20190328/hs37d5.fa.sa
outprefix: test # type "string"
nthreads: 0 # type "int"
fq: # type "File"
class: File
format: http://edamontology.org/format_1930
location: http://data.dbcls.jp/~inutano/human-reseq/test/data/human-reseq-test-data/fastq/NA18940.prob0.001.rep0_1.fastq.gz
RG_ID: ERR034597 # type "string"
RG_PL: ILLUMINA # type "string"
RG_PU: ERR034597 # type "string"
RG_LB: ERR034597 # type "string"
RG_SM: NA18942 # type "string"
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment