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ivirshup/ids_as_index.py

Created February 14, 2019 06:28
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Set `adata.var_names` to be ids not names. Based on default reading of 10x h5 files
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ids_as_index.py
def fix_names(adata):
adata.var_names_make_unique()
adata.var["gene_symbols"] = adata.var.index
adata.var.index = adata.var["gene_ids"]
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