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ivirshup/run-min-deps.sh

Last active January 16, 2024 14:24
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Local script for testing minimum dependency versions
Raw
run-min-deps.sh
# conda deactivate
mamba env remove -yn anndata-min-deps-test
mamba create -yn anndata-min-deps-test "python=3.9"
PACKAGES=`python3 ci/scripts/min-deps.py pyproject.toml --extra dev test`
# conda activate anndata-min-deps-test
# conda run -n anndata-min-deps-test pip install cupy-cuda12x
echo Installing $PACKAGES
conda run -n anndata-min-deps-test pip install $PACKAGES
conda run -n anndata-min-deps-test pip install pytest-xdist # cupy-cuda12x
conda run -n anndata-min-deps-test pip install -e . --no-deps
conda run -n anndata-min-deps-test pytest -n auto
conda list -n anndata-min-deps-tests
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