convert-species-names.py

import ndio.remote.OCPMeta as ndlims
import ndio.remote.OCP as OCP

oo = OCP()
ndl = ndlims()

secret = ?????

species = {
    'Mouse': 'M. musculus',
    'Drosophila': 'D. melanogaster',
    'Rat': 'R. rattus',
    'Zebrafish': 'D. rerio',
    'Worm': 'C. elegans'
}

tokens = oo.get_public_tokens()

for t in tokens:
    info = ndl.get_metadata(t)
    if 'species' in info:
        target_species = species[info['species']] \
            if info['species'] in species else info['species']
        ndl.set_metadata(t, {
            "secret": secret,
            "species": target_species
        })