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| ~/src/terra-cli on main !2 ······················································································· at 01:43:55 PM | |
| ❯ source tools/local-dev.sh | |
| Building Java code | |
| > Task :clean | |
| > Task :spotlessInternalRegisterDependencies | |
| > Task :spotlessJava | |
| > Task :spotlessJavaApply | |
| > Task :spotlessApply | |
| > Task :compileJava | |
| Note: ReflectConfigGen writing to: CLASS_OUTPUT/META-INF/native-image/picocli-generated/reflect-config.json | |
| Note: ResourceConfigGen writing to: CLASS_OUTPUT/META-INF/native-image/picocli-generated/resource-config.json | |
| Note: ProxyConfigGen writing to: CLASS_OUTPUT/META-INF/native-image/picocli-generated/proxy-config.json | |
| Note: Some input files use or override a deprecated API. | |
| Note: Recompile with -Xlint:deprecation for details. | |
| Note: Some input files use unchecked or unsafe operations. | |
| Note: Recompile with -Xlint:unchecked for details. | |
| > Task :processResources | |
| > Task :classes | |
| > Task :jar | |
| > Task :startScripts | |
| Skipping APP_HOME update | |
| > Task :installDist | |
| Deprecated Gradle features were used in this build, making it incompatible with Gradle 7.0. | |
| Use '--warning-mode all' to show the individual deprecation warnings. | |
| See https://docs.gradle.org/6.7/userguide/command_line_interface.html#sec:command_line_warnings | |
| BUILD SUCCESSFUL in 3s | |
| 9 actionable tasks: 9 executed | |
| Aliasing JAR file | |
| Setting the Docker image id to the default | |
| Exception in thread "main" java.lang.UnsatisfiedLinkError: /Users/jwarren/Library/Caches/JNA/temp/jna18112869401298016565.tmp: dlopen(/Users/jwarren/Library/Caches/JNA/temp/jna18112869401298016565.tmp, 0x0001): tried: '/Users/jwarren/Library/Caches/JNA/temp/jna18112869401298016565.tmp' (fat file, but missing compatible architecture (have 'i386,x86_64', need 'arm64e')) | |
| at java.base/java.lang.ClassLoader$NativeLibrary.load0(Native Method) | |
| at java.base/java.lang.ClassLoader$NativeLibrary.load(ClassLoader.java:2442) | |
| at java.base/java.lang.ClassLoader$NativeLibrary.loadLibrary(ClassLoader.java:2498) | |
| at java.base/java.lang.ClassLoader.loadLibrary0(ClassLoader.java:2694) | |
| at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2627) | |
| at java.base/java.lang.Runtime.load0(Runtime.java:768) | |
| at java.base/java.lang.System.load(System.java:1837) | |
| at com.sun.jna.Native.loadNativeDispatchLibraryFromClasspath(Native.java:1018) | |
| at com.sun.jna.Native.loadNativeDispatchLibrary(Native.java:988) | |
| at com.sun.jna.Native.<clinit>(Native.java:195) | |
| at com.github.dockerjava.httpclient5.UnixDomainSocket.<clinit>(UnixDomainSocket.java:80) | |
| at com.github.dockerjava.httpclient5.ApacheDockerHttpClientImpl$2.createSocket(ApacheDockerHttpClientImpl.java:120) | |
| at org.apache.hc.client5.http.impl.io.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:125) | |
| at org.apache.hc.client5.http.impl.io.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:409) | |
| at org.apache.hc.client5.http.impl.classic.InternalExecRuntime.connectEndpoint(InternalExecRuntime.java:164) | |
| at org.apache.hc.client5.http.impl.classic.InternalExecRuntime.connectEndpoint(InternalExecRuntime.java:174) | |
| at org.apache.hc.client5.http.impl.classic.ConnectExec.execute(ConnectExec.java:135) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement$1.proceed(ExecChainElement.java:57) | |
| at org.apache.hc.client5.http.impl.classic.ProtocolExec.execute(ProtocolExec.java:165) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement$1.proceed(ExecChainElement.java:57) | |
| at org.apache.hc.client5.http.impl.classic.HttpRequestRetryExec.execute(HttpRequestRetryExec.java:93) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement$1.proceed(ExecChainElement.java:57) | |
| at org.apache.hc.client5.http.impl.classic.RedirectExec.execute(RedirectExec.java:116) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement$1.proceed(ExecChainElement.java:57) | |
| at org.apache.hc.client5.http.impl.classic.ContentCompressionExec.execute(ContentCompressionExec.java:128) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.InternalHttpClient.doExecute(InternalHttpClient.java:178) | |
| at org.apache.hc.client5.http.impl.classic.CloseableHttpClient.execute(CloseableHttpClient.java:67) | |
| at com.github.dockerjava.httpclient5.ApacheDockerHttpClientImpl.execute(ApacheDockerHttpClientImpl.java:158) | |
| at com.github.dockerjava.httpclient5.ApacheDockerHttpClient.execute(ApacheDockerHttpClient.java:8) | |
| at com.github.dockerjava.core.DefaultInvocationBuilder.execute(DefaultInvocationBuilder.java:228) | |
| at com.github.dockerjava.core.DefaultInvocationBuilder.get(DefaultInvocationBuilder.java:202) | |
| at com.github.dockerjava.core.DefaultInvocationBuilder.get(DefaultInvocationBuilder.java:74) | |
| at com.github.dockerjava.core.exec.InspectImageCmdExec.execute(InspectImageCmdExec.java:28) | |
| at com.github.dockerjava.core.exec.InspectImageCmdExec.execute(InspectImageCmdExec.java:13) | |
| at com.github.dockerjava.core.exec.AbstrSyncDockerCmdExec.exec(AbstrSyncDockerCmdExec.java:21) | |
| at com.github.dockerjava.core.command.AbstrDockerCmd.exec(AbstrDockerCmd.java:35) | |
| at com.github.dockerjava.core.command.InspectImageCmdImpl.exec(InspectImageCmdImpl.java:40) | |
| at bio.terra.cli.app.utils.DockerClientWrapper.checkImageExists(DockerClientWrapper.java:64) | |
| at bio.terra.cli.command.config.set.Image.execute(Image.java:31) | |
| at bio.terra.cli.command.shared.BaseCommand.call(BaseCommand.java:63) | |
| at bio.terra.cli.command.shared.BaseCommand.call(BaseCommand.java:26) | |
| at picocli.CommandLine.executeUserObject(CommandLine.java:1953) | |
| at picocli.CommandLine.access$1300(CommandLine.java:145) | |
| at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2352) | |
| at picocli.CommandLine$RunLast.handle(CommandLine.java:2346) | |
| at picocli.CommandLine$RunLast.handle(CommandLine.java:2311) | |
| at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179) | |
| at picocli.CommandLine.execute(CommandLine.java:2078) | |
| at bio.terra.cli.command.Main.runCommand(Main.java:99) | |
| at bio.terra.cli.command.Main.main(Main.java:118) | |
| Exception in thread "main" java.lang.UnsatisfiedLinkError: /Users/jwarren/Library/Caches/JNA/temp/jna11599552073253536100.tmp: dlopen(/Users/jwarren/Library/Caches/JNA/temp/jna11599552073253536100.tmp, 0x0001): tried: '/Users/jwarren/Library/Caches/JNA/temp/jna11599552073253536100.tmp' (fat file, but missing compatible architecture (have 'i386,x86_64', need 'arm64e')) | |
| at java.base/java.lang.ClassLoader$NativeLibrary.load0(Native Method) | |
| at java.base/java.lang.ClassLoader$NativeLibrary.load(ClassLoader.java:2442) | |
| at java.base/java.lang.ClassLoader$NativeLibrary.loadLibrary(ClassLoader.java:2498) | |
| at java.base/java.lang.ClassLoader.loadLibrary0(ClassLoader.java:2694) | |
| at java.base/java.lang.ClassLoader.loadLibrary(ClassLoader.java:2627) | |
| at java.base/java.lang.Runtime.load0(Runtime.java:768) | |
| at java.base/java.lang.System.load(System.java:1837) | |
| at com.sun.jna.Native.loadNativeDispatchLibraryFromClasspath(Native.java:1018) | |
| at com.sun.jna.Native.loadNativeDispatchLibrary(Native.java:988) | |
| at com.sun.jna.Native.<clinit>(Native.java:195) | |
| at com.github.dockerjava.httpclient5.UnixDomainSocket.<clinit>(UnixDomainSocket.java:80) | |
| at com.github.dockerjava.httpclient5.ApacheDockerHttpClientImpl$2.createSocket(ApacheDockerHttpClientImpl.java:120) | |
| at org.apache.hc.client5.http.impl.io.DefaultHttpClientConnectionOperator.connect(DefaultHttpClientConnectionOperator.java:125) | |
| at org.apache.hc.client5.http.impl.io.PoolingHttpClientConnectionManager.connect(PoolingHttpClientConnectionManager.java:409) | |
| at org.apache.hc.client5.http.impl.classic.InternalExecRuntime.connectEndpoint(InternalExecRuntime.java:164) | |
| at org.apache.hc.client5.http.impl.classic.InternalExecRuntime.connectEndpoint(InternalExecRuntime.java:174) | |
| at org.apache.hc.client5.http.impl.classic.ConnectExec.execute(ConnectExec.java:135) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement$1.proceed(ExecChainElement.java:57) | |
| at org.apache.hc.client5.http.impl.classic.ProtocolExec.execute(ProtocolExec.java:165) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement$1.proceed(ExecChainElement.java:57) | |
| at org.apache.hc.client5.http.impl.classic.HttpRequestRetryExec.execute(HttpRequestRetryExec.java:93) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement$1.proceed(ExecChainElement.java:57) | |
| at org.apache.hc.client5.http.impl.classic.RedirectExec.execute(RedirectExec.java:116) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement$1.proceed(ExecChainElement.java:57) | |
| at org.apache.hc.client5.http.impl.classic.ContentCompressionExec.execute(ContentCompressionExec.java:128) | |
| at org.apache.hc.client5.http.impl.classic.ExecChainElement.execute(ExecChainElement.java:51) | |
| at org.apache.hc.client5.http.impl.classic.InternalHttpClient.doExecute(InternalHttpClient.java:178) | |
| at org.apache.hc.client5.http.impl.classic.CloseableHttpClient.execute(CloseableHttpClient.java:67) | |
| at com.github.dockerjava.httpclient5.ApacheDockerHttpClientImpl.execute(ApacheDockerHttpClientImpl.java:158) | |
| at com.github.dockerjava.httpclient5.ApacheDockerHttpClient.execute(ApacheDockerHttpClient.java:8) | |
| at com.github.dockerjava.core.DefaultInvocationBuilder.execute(DefaultInvocationBuilder.java:228) | |
| at com.github.dockerjava.core.DefaultInvocationBuilder.get(DefaultInvocationBuilder.java:202) | |
| at com.github.dockerjava.core.DefaultInvocationBuilder.get(DefaultInvocationBuilder.java:74) | |
| at com.github.dockerjava.core.exec.InspectImageCmdExec.execute(InspectImageCmdExec.java:28) | |
| at com.github.dockerjava.core.exec.InspectImageCmdExec.execute(InspectImageCmdExec.java:13) | |
| at com.github.dockerjava.core.exec.AbstrSyncDockerCmdExec.exec(AbstrSyncDockerCmdExec.java:21) | |
| at com.github.dockerjava.core.command.AbstrDockerCmd.exec(AbstrDockerCmd.java:35) | |
| at com.github.dockerjava.core.command.InspectImageCmdImpl.exec(InspectImageCmdImpl.java:40) | |
| at bio.terra.cli.app.utils.DockerClientWrapper.checkImageExists(DockerClientWrapper.java:64) | |
| at bio.terra.cli.command.config.set.AppLaunch.execute(AppLaunch.java:25) | |
| at bio.terra.cli.command.shared.BaseCommand.call(BaseCommand.java:63) | |
| at bio.terra.cli.command.shared.BaseCommand.call(BaseCommand.java:26) | |
| at picocli.CommandLine.executeUserObject(CommandLine.java:1953) | |
| at picocli.CommandLine.access$1300(CommandLine.java:145) | |
| at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2352) | |
| at picocli.CommandLine$RunLast.handle(CommandLine.java:2346) | |
| at picocli.CommandLine$RunLast.handle(CommandLine.java:2311) | |
| at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179) | |
| at picocli.CommandLine.execute(CommandLine.java:2078) | |
| at bio.terra.cli.command.Main.runCommand(Main.java:99) | |
| at bio.terra.cli.command.Main.main(Main.java:118) | |
| Pulling the default Docker image | |
| stable: Pulling from terra-cli-dev/terra-cli/0.176.0 | |
| c229119241af: Pull complete | |
| 2f1dc05f270b: Pull complete | |
| 39b2c24c052e: Pull complete | |
| e94fd7d3bf7a: Pull complete | |
| 5c108cf6834c: Pull complete | |
| 684f77766c46: Pull complete | |
| 79efc4bb9560: Pull complete | |
| 0aa6ed739e6e: Pull complete | |
| Digest: sha256:fb80f0d2365bb86abca4876655642beebaf58f08a25a5887746bc95cce323c2a | |
| Status: Downloaded newer image for gcr.io/terra-cli-dev/terra-cli/0.176.0:stable | |
| gcr.io/terra-cli-dev/terra-cli/0.176.0:stable | |
| Setting the server to its current value, to pull any changes | |
| Terra server is set to broad-dev-cli-testing (UNCHANGED). | |
| Making all 'tools' scripts executable | |
| Reading the CI service account key file from Vault | |
| Reading the domain-wide delegated test users service account key file from Vault | |
| Reading the external project service account key file from Vault | |
| Reading the Janitor client service account key file from Vault | |
| Reading the WSM app service account key file for the verilycli deployment from Vault | |
| Reading test user refresh tokens from Vault | |
| ~/src/terra-cli on main !2 ············································································ took 1m 3s at 01:45:01 PM | |
| ❯ terra | |
| Usage: terra [COMMAND] | |
| Terra CLI | |
| Commands: | |
| app Run applications in the workspace. | |
| auth Retrieve and manage user credentials. | |
| bq Call bq in the Terra workspace. | |
| config Configure the CLI. | |
| gcloud Call gcloud in the Terra workspace. | |
| git Call git in the Terra workspace. | |
| group Manage groups of users. | |
| gsutil Call gsutil in the Terra workspace. | |
| nextflow Call nextflow in the Terra workspace. | |
| notebook Use GCP Notebooks in the workspace. | |
| resolve Resolve a resource to its cloud id or path. | |
| resource Manage resources in the workspace. | |
| server Connect to a Terra server. | |
| spend Manage spend profiles. | |
| status Print details about the current workspace and server. | |
| user Manage users. | |
| version Get the installed version. | |
| workspace Setup a Terra workspace. |
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