jaclynsaunders

import pandas as pd
from Bio import SeqIO

#As written, this stores sequences in memory. For very large files will want to
#use a different Biopython parsing method.

FILENAME = "input_file_to_rename.fasta"
RENAME_PATTERN = "Project-name_ORF_"
OUT_FILENAME = "outfile_Project_ORF_renamed"

jaclynsaunders

import pandas as pd
import re

INPUT_FILE = "CAT-taxa-out.txt"
OUTPUT_FILE = "formatted_CAT-taxa-out.txt"

ORF_list = []
taxid_list = []
no_hits = []

jaclynsaunders

jaclynsaunders