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Created November 13, 2015 07:33
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Diff to the original dictionaries
diff --git a/DictionaryIOD_MNE.txt b/DictionaryIOD_MNE.txt
index 016b05a..0be3489 100644
--- a/DictionaryIOD_MNE.txt
+++ b/DictionaryIOD_MNE.txt
@@ -1,3 +1,10 @@
+# MGH Fiff tag (IOD) dictionary
+#
+# This is the complete dictionary.
+# MAY CONTAIN CONFIDENTIAL INFORMATION. DO NOT PUBLISH.
+# Copyright Elekta Neuromag Oy.
+# All rights reserved.
+#
# Structured objects (blocks)
# Syntax version 1.1
#
@@ -12,11 +19,14 @@
#======================================================================
#======================================================================
# 350...
-# 390 Reserved for MNE estimates (MHᅵ)
+# 390 Reserved for MNE estimates (MHä)
#
-# This range is reserved fot MGH and Matti Hï¿œmï¿œlï¿œinen for developing
+# This range is reserved fot MGH and Matti Hämäläinen for developing
# MNE software.
#
+# THIS TAG RANGE IS POTENTIALLY CONFIDENTIAL INFORMATION.
+# DO NOT PUBLISH WITHOUT PERMISSION.
+#
#======================================================================
# Fiff blocks associated with MNE computation (350...)
@@ -26,23 +36,19 @@ mne_source_space 351
mne_forward_solution 352
mne_parent_mri_file 353
mne_parent_meas_file 354
-mne_cov 355
+mne_cov 355
mne_inverse_solution 356
mne_named_matrix 357
mne_env 358
mne_bad_channels 359
mne_vertex_map 360
-mne_events 361
-mne_morph_map 362
-mne_surface_map 363
-mne_surface_map_group 364
+mne_events 361
+mne_morph_map 362
mne_ctf_comp 370
mne_ctf_comp_data 371
-mne_derivations 372
-mne_epochs 373
-mne_ica 374
+mne_derivations 372
#======================================================================
diff --git a/DictionaryTags_MNE.txt b/DictionaryTags_MNE.txt
index 67174ea..8d30629 100644
--- a/DictionaryTags_MNE.txt
+++ b/DictionaryTags_MNE.txt
@@ -1,3 +1,10 @@
+# MGH FIFF tag dictionary.
+#
+# This is the complete dictionary.
+# CONTAINS CONFIDENTIAL INFORMATION. DO NOT PUBLISH.
+# Copyright Elekta Neuromag Oy.
+# All rights reserved.
+#
# Syntax version 1.1
#
# $Revision: 1.2 $
@@ -12,11 +19,14 @@
#======================================================================
# 3500...
-# 3999 Reserved for MNE estimates (MHᅵ)
+# 3999 Reserved for MNE estimates (MHä)
#
-# This range is reserved for MGH and Matti Hï¿œmï¿œlï¿œinen for developing
+# This range is reserved for MGH and Matti Hämäläinen for developing
# MNE software.
#
+# THIS TAG RANGE IS POTENTIALLY CONFIDENTIAL INFORMATION.
+# DO NOT PUBLISH WITHOUT PERMISSION.
+#
#======================================================================
#<reserved> 3500 - "Reserved"
@@ -43,25 +53,21 @@ mne_file_name 3508 string "" /* This removes the collision wi
# 3510... Source space
#
-mne_source_space_points 3510 ? "The vertices"
-mne_source_space_normals 3511 ? "The vertex normals"
-mne_source_space_npoints 3512 ? "How many vertices"
-mne_source_space_selection 3513 ? "Which are selected to the source space"
-mne_source_space_nuse 3514 ? "How many are in use"
+mne_source_space_points 3510 ? ""
+mne_source_space_normals 3511 ? ""
+mne_source_space_npoints 3512 ? ""
+mne_source_space_selection 3513 ? ""
+mne_source_space_nuse 3514 ? ""
mne_source_space_nearest 3515 ? "Nearest source space vertex for all vertices"
mne_source_space_nearest_dist 3516 ? "Distance to the Nearest source space vertex for all vertices"
-mne_source_space_id 3517 ? "Identifier"
-mne_source_space_type 3518 enum(mne_space) "Surface or volume"
-mne_source_space_vertices 3519 ? "List of vertices (zero based)"
#
# 3520... Forward solution
#
-mne_forward_solution 3520 ? ""
-mne_source_orientation 3521 ? "" /* Fixed or free */
-mne_included_methods 3522 ? ""
-mne_forward_solution_grad 3523 ? ""
+mne_forward_solution 3520 ? ""
+mne_source_orientation 3521 ? "" /* Fixed or free */
+mne_included_methods 3522 ? ""
#
# 3530... Covariance matrix
@@ -73,9 +79,6 @@ mne_cov 3532 ? "Full matrix in packed representation (lower tri
mne_cov_diag 3533 ? "Diagonal matrix"
mne_cov_eigenvalues 3534 ? "Eigenvalues and eigenvectors of the above"
mne_cov_eigenvectors 3535 ? ""
-mne_cov_nfree 3536 ? "Number of degrees of freedom"
-mne_cov_method 3537 ? "The estimator used"
-mne_cov_score 3538 ? "Negative log-likelihood"
/*
* 3540... Inverse operator
@@ -95,91 +98,27 @@ mne_inverse_full 3544 ? "Inverse operator as one matrix
mne_inverse_source_orientations 3545 enum(mne_ori) "Contains the orientation of one source per row
* The source orientations must be expressed in the coordinate system
* given by FIFF_MNE_COORD_FRAME"
-mne_inverse_leads_weighted 3546 ? "The eigenleads (already weighted with R^0.5)"
-mne_inverse_source_unit 3547 ? "Are the sources given in Am or Am/m^2 ?"
#
# 3550... Saved environment info
#
-mne_env_working_dir 3550 string "Working directory where the file was created"
-mne_env_command_line 3551 string "The command used to create the file"
-mne_external_big_endian 3552 ? "Reference to an external binary file (big-endian)"
-mne_external_little_endian 3553 ? "Reference to an external binary file (little-endian)"
+mne_env_working_dir 3550 string "Working directory where the file was created"
+mne_env_command_line 3551 string "The command used to create the file"
#
# 3560... Miscellaneous MNE
#
-mne_proj_item_active 3560 ? "Is this projection item active?"
-mne_event_list 3561 ? "An event list (for STI 014)"
-mne_hemi 3562 ? "Hemisphere association for general purposes"
-mne_data_skip_nop 3563 ? "A data skip turned off in the raw data"
-mne_orig_ch_info 3564 ? "Channel information before any changes"
-mne_event_trigger_mask 3565 ? "Mask applied to the trigger channnel values"
-mne_event_comments 3566 ? "Event comments merged into one long string"
-mne_custom_ref 3567 ? "Whether a custom reference was applied to the data"
-mne_baseline_min 3568 ? "Time of baseline beginning"
-mne_baseline_max 3569 ? "Time of baseline end"
+mne_lin_proj_applied 3560 ? "Has the linear projection been applied to these data? "
#
# 3570... Vertex maps
#
-mne_morph_map 3570 ? "Mapping of closest vertices on the sphere"
-mne_morph_map_from 3571 ? "Which subject is this map from"
-mne_morph_map_to 3572 ? "Which subject is this map to"
-
-#
-# 3580... CTF compensation data
-#
-mne_ctf_comp_kind 3580 ? "What kind of compensation"
-mne_ctf_comp_data 3581 ? "The compensation data itself"
-mne_ctf_comp_calibrated 3582 ? "Are the coefficients calibrated?"
-
-mne_derivation_data 3585 ? "Used to store information about EEG and other derivations"
-
-mne_source_space_interpolator 3597 ? "Matrix to interpolate a volume source space into a mri volume"
-mne_source_space_mri_file 3598 ? "MRI file used in the interpolation"
-
-mne_source_space_ntri 3590 ? "Number of triangles"
-mne_source_space_triangles 3591 ? "The triangulation"
-mne_source_space_nuse_tri 3592 ? "Number of triangles corresponding to the number of vertices in use"
-mne_source_space_use_triangles 3593 ? "The triangulation of the used vertices in the source space"
-mne_source_space_nneighbors 3594 ? "Number of neighbors for each source space point (used for volume source spaces)"
-mne_source_space_neighbors 3595 ? "Neighbors for each source space point (used for volume source spaces)"
-mne_source_space_voxel_dims 3596 ? "Voxel space dimensions in a volume source space"
-mne_source_space_dist 3599 ? "Distances between vertices in use (along the surface)"
-mne_source_space_dist_limit 3600 ? "If distance is above this limit (in the volume) it has not been calculated"
-
-#
-# 3601... values associated with ICA decomposition
-#
-
-mne_ica_interface_params 3601 ? "ICA interface parameters"
-mne_ica_channel_names 3602 ? "ICA channel names"
-mne_ica_whitener 3603 ? "ICA whitener"
-mne_ica_pca_components 3604 ? "PCA components"
-mne_ica_pca_explained_var 3605 ? "PCA explained variance"
-mne_ica_pca_mean 3606 ? "PCA mean"
-mne_ica_matrix 3607 ? "ICA unmixing matrix"
-mne_ica_bads 3608 ? "ICA bad sources"
-mne_ica_misc_params 3609 ? "ICA misc params"
-mne_surface_map_data 3610 ? "Surface map data"
-mne_surface_map_kind 3611 ? "Type of map"
-
-#
-# 3700... MNE RealTime
-#
-
-mne_rt_command 3700 ? "realtime command"
-mne_rt_client_id 3701 ? "realtime client"
-
-#
-# 3710... MNE epochs bookkeeping
-#
-mne_epochs_selection 3710 ? "the epochs selection"
-mne_epochs_drop_log 3711 ? "the drop log"
+mne_vertex_map 3570 ? "Mapping of closest vertices on the sphere"
+mne_vertex_map_from 3571 ? "Which subject is this map from"
+mne_vertex_map_to 3572 ? "Which subject is this map to"
-#<reserved> 3712 - "Reserved for MNE sw. (MHᅵ)"
+#<reserved> 3573 - "Reserved for MNE sw. (MHä)"
#... ...
-#<reserved> 3799 - "Reserved for MNE sw. (MHᅵ)"
+#<reserved> 3799 - "Reserved for MNE sw. (MHä)"
diff --git a/DictionaryTypes_MNE.txt b/DictionaryTypes_MNE.txt
index 6b9834a..d2a74c2 100644
--- a/DictionaryTypes_MNE.txt
+++ b/DictionaryTypes_MNE.txt
@@ -1,3 +1,10 @@
+# MGH Fiff tag dictionary (types)
+#
+# This is the complete dictionary.
+# MAY CONTAIN CONFIDENTIAL INFORMATION. DO NOT PUBLISH.
+# Copyright Elekta Neuromag Oy.
+# All rights reserved.
+#
# Syntax version 1.1
#
# $Revision: 1.2 $
@@ -11,17 +18,19 @@
#
#======================================================================
#======================================================================
-# Reserved for MNE estimates (MHᅵ&MGH)
+# Reserved for MNE estimates (MHä&MGH)
#
-# This range is reserved for MGH and Matti Hï¿œmï¿œlï¿œinen for developing
+# This range is reserved for MGH and Matti Hämäläinen for developing
# MNE software.
#
+# THESE TYPES ARE POTENTIALLY CONFIDENTIAL INFORMATION.
+# DO NOT PUBLISH WITHOUT PERMISSION.
+#
#======================================================================
enum(mne_ori) "Fiff values associated with MNE computations"
{
- unknown 0
fixed 1 "Source orientations are fixed"
free 2 "Source orientations are free"
}
@@ -37,14 +46,12 @@ enum(mne_ori) "Fiff values associated with MNE computations"
#define FIFFV_MNE_EEG 2 ""
#define FIFFV_MNE_MEG_EEG 3 ""
-#define FIFFV_MNE_PROJ_ITEM_EEG_AVREF 10 "Linear projection related to EEG average reference"
-
enum(mne_priors) "MNE priors"
{
none 0 ""
depth 1 ""
- loreta 2 ""
- sulci 3 ""
+ loreta 2 ""
+ sulci 3 ""
}
enum(covariance_type)
@@ -63,15 +70,15 @@ alias_enum(mne_cov) covariance_type
enum(mne_lin_proj) "Linear projection applied"
{
- none 0 "Linear projection not applied"
- meas_info 1 "The projection in meas info applied"
- in_block 2 "The projection in data block applied"
+ none 0 "Linear projection not applied"
+ meas_info 1 "The projection in meas info applied"
+ in_block 2 "The projection in data block applied"
}
enum (mne_map) "MNE output map type"
{
- unknown -1 "Unspecified"
+ unknown 0 "Unspecified"
scalar_current 1 "Scalar current value"
scalar_current_size 2 "Absolute value of the above"
vector_current 3 "Current vector components"
@@ -92,19 +99,3 @@ enum (mne_surf) "MNE surface type"
mne_surf_right_hemi 102 ""
mne_surf_meg_helmet 201 ""
}
-
-enum (mne_space) "MNE source space type"
-{
- unknown -1
- mne_space_surface 1
- mne_space_volume 2
- mne_space_discrete 3
-}
-
-enum (mne_cov_ch) "Covariance matrix channel classification"
-{
- unknown = -1 "No idea"
- mne_meg_mag = 0 "Axial gradiometer or magnetometer [T]"
- mne_meg_grad = 1 "Planar gradiometer [T/m]"
- mne_eeg = 2 "EEG [V]"
-}
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