update-jupyter-notebook.sh

#! /bin/bash

# script to update jupyter notebooks from command line 



#### Environment
git config --global core.mergeoptions --no-edit
DATE=`Actualizado a fecha: date +'%Y-%m-%d %H:%M'`
export GIT_MERGE_AUTOEDIT=no
export  GIT_PULL_AUTOEDIT=no

NOTEBOOK_LIST="Madrid_Pain_Graphs.ipynb Pain_Graphs.ipynb Momo.ipynb"


#### Get Data from upstream 
cd /root/scripts/COVID-19/jupyter ;   
source activate jupyter   ;    
MODIFIED_FILES=` git pull --no-edit original master  2>&1 | grep -e csv  | wc -l ` 
[ $MODIFIED_FILES -eq 0 ] && echo "Nothin to update, exit " && exit 0


#### Update data
for NOTEBOOK in `echo $NOTEBOOK_LIST`
do
        echo `date`:: $NOTEBOOK
        jupyter nbconvert --to notebook --inplace --execute ${NOTEBOOK}
done

#### Push data
cd ..
git add jupyter
git commit -m "$DATE"
git push origin master