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jakereps/env Secret

Created January 12, 2018 00:47
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conda list
# packages in environment at /home/jorden/dev/mc3/envs/biota:
#
appdirs 1.4.3 <pip>
asn1crypto 0.22.0 py35_0 conda-forge
awscli 1.11.132 <pip>
backports 1.0 py35_1 conda-forge
backports.functools_lru_cache 1.4 py35_1 conda-forge
backports.weakref 1.0rc1 <pip>
bambi 0.1.0 <pip>
beautifulsoup4 4.6.0 <pip>
bioconductor-biobase 2.38.0 r3.4.1_0 bioconda
bioconductor-biocgenerics 0.24.0 r3.4.1_0 bioconda
bioconductor-biocparallel 1.12.0 r3.4.1_0 bioconda
bioconductor-biostrings 2.46.0 r3.4.1_0 bioconda
bioconductor-dada2 1.6.0 r3.4.1_0 bioconda
bioconductor-delayedarray 0.4.1 r3.4.1_0 bioconda
bioconductor-genomeinfodb 1.14.0 r3.4.1_0 bioconda
bioconductor-genomeinfodbdata 1.0.0 r3.4.1_1 bioconda
bioconductor-genomicalignments 1.14.0 r3.4.1_0 bioconda
bioconductor-genomicranges 1.30.0 r3.4.1_0 bioconda
bioconductor-iranges 2.12.0 r3.4.1_0 bioconda
bioconductor-rsamtools 1.30.0 r3.4.1_0 bioconda
bioconductor-s4vectors 0.16.0 r3.4.1_0 bioconda
bioconductor-shortread 1.36.0 r3.4.1_0 bioconda
bioconductor-summarizedexperiment 1.8.0 r3.4.1_0 bioconda
bioconductor-xvector 0.18.0 r3.4.1_0 bioconda
bioconductor-zlibbioc 1.24.0 r3.4.1_0 bioconda
biom-format 2.1.6 <pip>
biom-format 2.1.6 py35_8 qiime2
bkcharts 0.2 py35_0
blas 1.1 openblas conda-forge
blast 2.6.0 boost1.64_2 bioconda
bleach 2.0.0 py35_0 conda-forge
bleach 1.5.0 <pip>
bokeh 0.12.13 py35_0 conda-forge
boost 1.64.0 py35_4 conda-forge
boost-cpp 1.64.0 1 conda-forge
botocore 1.5.95 <pip>
bs4 0.0.1 <pip>
bzip2 1.0.6 1 conda-forge
ca-certificates 2017.11.5 0 conda-forge
CacheControl 0.12.3 <pip>
cachecontrol 0.12.3 py35_0
cairo 1.14.6 4 conda-forge
certifi 2017.11.5 py35_0 conda-forge
certifi 2017.7.27.1 <pip>
cffi 1.11.2 py35_0 conda-forge
chardet 3.0.4 py35_0 conda-forge
chardet 3.0.4 <pip>
click 6.7 py_1 conda-forge
colorama 0.3.9 <pip>
coverage 4.4.1 <pip>
cryptography 2.1.4 py35_0 conda-forge
cual-id 0.9.1 <pip>
curl 7.54.1 0 conda-forge
cutadapt 1.15 py35_0 bioconda
cycler 0.10.0 py35_0 conda-forge
cython 0.27.3 py35_0 conda-forge
dbus 1.10.22 0 conda-forge
deblur 1.0.3 py35h87d23f6_0 biocore
decorator 4.1.2 py35_0 conda-forge
docutils 0.14 <pip>
emperor 1.0.0beta13 py35_1 conda-forge
entrypoints 0.2.3 py35_1 conda-forge
entrypoints 0.2.2 <pip>
ete3 3.1.1 <pip>
expat 2.2.5 0 conda-forge
fastcluster 1.1.24 py35_0 conda-forge
fasttree 2.1.10 0 bioconda
flake8 3.4.1 <pip>
fontconfig 2.12.1 6 conda-forge
freetype 2.7 1 conda-forge
future 0.16.0 py35_0 conda-forge
gettext 0.19.7 1 conda-forge
glib 2.51.4 0 conda-forge
gmp 6.1.2 0 conda-forge
gneiss 0.4.2 py35hda95eb5_6 biocore
google-api-python-client 1.6.4 <pip>
graphite2 1.3.10 0 conda-forge
gsl 2.1 2 conda-forge
gst-plugins-base 1.8.0 0 conda-forge
gstreamer 1.8.0 2 conda-forge
h5py 2.7.0 np112py35_0 conda-forge
harfbuzz 1.4.3 0 conda-forge
hdf5 1.8.17 11 conda-forge
html5lib 1.0.1 py_0 conda-forge
html5lib 0.9999999 <pip>
httplib2 0.10.3 <pip>
icu 58.2 0 conda-forge
idna 2.6 py35_1 conda-forge
idna 2.5 <pip>
ijson 2.3 py35_0 qiime2
intel-openmp 2018.0.0 hc7b2577_8
ipykernel 4.7.0 py35_0 conda-forge
ipyparallel 6.0.2 <pip>
ipython 5.3.0 <pip>
ipython 6.2.1 py35_1 conda-forge
ipython-genutils 0.2.0 <pip>
ipython_genutils 0.2.0 py35_0 conda-forge
ipywidgets 6.0.0 <pip>
ipywidgets 7.1.0 py35_0 conda-forge
jbig 2.1 0
jedi 0.10.2 py35_0 conda-forge
Jinja2 2.9.5 <pip>
jinja2 2.10 py35_0 conda-forge
jmespath 0.9.3 <pip>
joblib 0.11 <pip>
jpeg 9b 2 conda-forge
jsonschema 2.6.0 py35_0 conda-forge
jupyter 1.0.0 <pip>
jupyter 1.0.0 py35_0 conda-forge
jupyter-client 5.0.0 <pip>
jupyter-console 5.1.0 <pip>
jupyter_client 5.2.1 py35_0 conda-forge
jupyter_console 5.2.0 py35_0
jupyter_core 4.4.0 py_0 conda-forge
Keras 2.0.8 <pip>
krb5 1.14.2 0 conda-forge
libffi 3.2.1 3 conda-forge
libgcc 7.2.0 h69d50b8_2
libgcc-ng 7.2.0 h7cc24e2_2
libgfortran 3.0.0 1
libgfortran-ng 7.2.0 h9f7466a_2
libgpuarray 0.6.9 0 conda-forge
libiconv 1.15 0 conda-forge
libpng 1.6.28 1 conda-forge
libsodium 1.0.15 1 conda-forge
libssh2 1.8.0 1 conda-forge
libstdcxx-ng 7.2.0 h7a57d05_2
libtiff 4.0.7 0 conda-forge
libxcb 1.12 1 conda-forge
libxml2 2.9.5 0 conda-forge
libxslt 1.1.29 5 conda-forge
lockfile 0.12.2 py35_0 conda-forge
luigi 2.7.1 <pip>
lxml 4.1.0 py35_0 conda-forge
mafft 7.310 0 bioconda
mako 1.0.7 py35_0 conda-forge
Markdown 2.6.9 <pip>
MarkupSafe 1.0 <pip>
markupsafe 1.0 py35_0 conda-forge
matplotlib 2.1.1 py35_0 conda-forge
matplotlib-venn 0.11.5 <pip>
mccabe 0.6.1 <pip>
mistune 0.8.3 py_0 conda-forge
mistune 0.7.4 <pip>
mkl 2018.0.1 h19d6760_4
mlpy 3.5.0 <pip>
mock 2.0.0 <pip>
mongomock 3.8.0 <pip>
msgpack-python 0.4.8 py35_0 conda-forge
msgpack-python 0.4.8 <pip>
natsort 5.0.2 py35_0 conda-forge
natsort 5.0.2 <pip>
nbconvert 5.3.1 py_1 conda-forge
nbconvert 5.1.1 <pip>
nbformat 4.4.0 py35_0 conda-forge
nbformat 4.3.0 <pip>
ncurses 5.9 10 conda-forge
nltk 3.2.4 <pip>
nomkl 1.0 0
nose 1.3.7 py35_2 conda-forge
notebook 4.4.1 <pip>
notebook 5.2.2 py35_1 conda-forge
numpy 1.12.1 py35_blas_openblas_200 [blas_openblas] conda-forge
numpy 1.12.0 <pip>
numpy 1.13.0 <pip>
numpy 1.13.3 <pip>
oauth2client 4.1.2 <pip>
olefile 0.44 <pip>
olefile 0.44 py35_0 conda-forge
openblas 0.2.19 2 conda-forge
openssl 1.0.2n 0 conda-forge
packaging 16.8 <pip>
packaging 16.8 py35_0
pandas 0.20.3 <pip>
pandas 0.22.0 py35_0 conda-forge
pandas 0.20.2 <pip>
pandoc 2.0.0.1 0 conda-forge
pandocfilters 1.4.1 py35_0 conda-forge
pandocfilters 1.4.2 <pip>
pango 1.40.4 0 conda-forge
path.py 10.3.1 py35_0
patsy 0.5.0 py35_0 conda-forge
pbr 3.1.1 <pip>
pcre 8.39 0 conda-forge
pexpect 4.3.1 py35_0 conda-forge
pickleshare 0.7.4 py35_0 conda-forge
pigz 2.3.4 0 conda-forge
pillow 4.3.0 py35_0 conda-forge
Pillow 4.2.1 <pip>
pip 9.0.1 py35_1 conda-forge
pixman 0.34.0 1 conda-forge
prompt-toolkit 1.0.15 <pip>
prompt-toolkit 1.0.13 <pip>
prompt_toolkit 1.0.15 py35_0 conda-forge
protobuf 3.4.0 <pip>
psutil 5.4.0 py35_0 conda-forge
ptyprocess 0.5.2 py35_0 conda-forge
py 1.4.34 <pip>
pyasn1 0.3.7 <pip>
pyasn1-modules 0.1.5 <pip>
pycodestyle 2.3.1 <pip>
pycparser 2.18 py35_0 conda-forge
pydot-ng 1.0.0 <pip>
pyflakes 1.6.0 <pip>
Pygments 2.2.0 <pip>
pygments 2.2.0 py35_0 conda-forge
pygpu 0.6.9 py35_0
pymc3 3.2 <pip>
pymongo 3.5.1 <pip>
pyopenssl 17.4.0 py35_0 conda-forge
pyparsing 2.2.0 <pip>
pyparsing 2.2.0 py35_0 conda-forge
pyqt 5.6.0 py35_4 conda-forge
pysocks 1.6.7 py35_0 conda-forge
pytest 3.2.2 <pip>
pytest-cov 2.5.1 <pip>
python 3.5.4 0 conda-forge
python-daemon 2.1.2 <pip>
python-dateutil 2.6.1 <pip>
python-dateutil 2.6.1 py35_0 conda-forge
pytz 2017.3 py_2 conda-forge
pyyaml 3.12 py35_1 conda-forge
pyzmq 16.0.2 py35_3 conda-forge
q2-alignment 2017.12.0 py35_0 qiime2/label/r2017.12
q2-composition 2017.12.0 py35_0 qiime2/label/r2017.12
q2-cutadapt 2017.12.0 py35_0 qiime2/label/r2017.12
q2-dada2 2017.12.1 py35_0 qiime2/label/r2017.12
q2-deblur 2017.12.0 py35_0 qiime2/label/r2017.12
q2-demux 2017.12.0 py35_0 qiime2/label/r2017.12
q2-diversity 2017.12.0 py35_0 qiime2/label/r2017.12
q2-emperor 2017.12.0 py35_0 qiime2/label/r2017.12
q2-feature-classifier 2017.12.0 py35_0 qiime2/label/r2017.12
q2-feature-table 2017.12.0 py35_0 qiime2/label/r2017.12
q2-gneiss 2017.12.0 py35_0 qiime2/label/r2017.12
q2-longitudinal 2017.12.0 py35_0 qiime2/label/r2017.12
q2-metadata 2017.12.0 py35_0 qiime2/label/r2017.12
q2-phylogeny 2017.12.0 py35_0 qiime2/label/r2017.12
q2-quality-control 2017.12.0 py35_0 qiime2/label/r2017.12
q2-quality-filter 2017.12.0 py35_0 qiime2/label/r2017.12
q2-sample-classifier 2017.12.0 py35_0 qiime2/label/r2017.12
q2-taxa 2017.12.0 py35_0 qiime2/label/r2017.12
q2-types 2017.12.0 py35_0 qiime2/label/r2017.12
q2-vsearch 2017.12.0 py35_0 qiime2/label/r2017.12
q2cli 2017.12.0 py35_0 qiime2/label/r2017.12
q2templates 2017.12.0 py35_0 qiime2/label/r2017.12
qiime2 2017.12.1 py35_0 qiime2/label/r2017.12
qrcode 5.3 <pip>
qt 5.6.2 3 conda-forge
qtconsole 4.2.1 <pip>
qtconsole 4.3.1 py35_0
r 3.3.2 r3.3.2_0
r-assertthat 0.1 r3.3.2_4
r-backports 1.1.1 r342h9a9f1f2_0 r
r-base 3.4.1 0 conda-forge
r-base64enc 0.1_3 r342h7c929ec_4 r
r-bh 1.65.0_1 r3.4.1_0 conda-forge
r-bindr 0.1 r342hdee8079_0 r
r-bindrcpp 0.2 r342h4ea5b31_0 r
r-bitops 1.0_6 r3.4.1_0 conda-forge
r-boot 1.3_18 r3.3.2_0
r-broom 0.4.2 r342h90c284a_0 r
r-caret 6.0_77 r342h201f268_0 r
r-catools 1.17.1 r342hf01772b_4 r
r-cellranger 1.1.0 r342h51baf57_0 r
r-class 7.3_14 r3.3.2_0
r-cluster 2.0.5 r3.3.2_0
r-codetools 0.2_15 r3.3.2_0
r-colorspace 1.3_2 r3.4.1_0 conda-forge
r-crayon 1.3.4 r342h0ed458a_0 r
r-curl 3.0 r342hba591e3_0 r
r-cvst 0.2_1 r342h830f301_0 r
r-data.table 1.10.4 r3.4.1_0 conda-forge
r-dbi 0.7 r342h835dbd3_0 r
r-ddalpha 1.3.1 r342hd2d3f94_0 r
r-deoptimr 1.0_8 r342h996e1ad_0 r
r-dichromat 2.0_0 r3.4.1_0 conda-forge
r-digest 0.6.12 r3.4.1_0 conda-forge
r-dimred 0.1.0 r342hb158d3e_0 r
r-dplyr 0.7.4 r342hee63e26_0 r
r-drr 0.0.2 r342h0fe108c_0 r
r-essentials 1.5.2 r3.3.2_0 r
r-evaluate 0.10.1 r342hb679cc2_0 r
r-forcats 0.2.0 r342h5fcb364_0 r
r-foreach 1.4.3 r342h49221b0_4 r
r-foreign 0.8_67 r3.3.2_0
r-formatr 1.5 r342h0e06a18_0 r
r-futile.logger 1.4.3 r3.4.1_0 conda-forge
r-futile.options 1.0.0 r3.4.1_0 conda-forge
r-ggplot2 2.2.1 r3.4.1_0 conda-forge
r-gistr 0.4.0 r342h5cd5773_0 r
r-glmnet 2.0_13 r342h0aac7f1_0 r
r-glue 1.1.1 r342h3154e12_0 r
r-gower 0.1.2 r342h54e18f5_0 r
r-gtable 0.2.0 r3.4.1_0 conda-forge
r-haven 1.1.0 r342h8909e7d_0 r
r-hexbin 1.27.1 r342h72fd8d9_4 r
r-highr 0.6 r342h2351100_0 r
r-hms 0.3 r342ha729a9b_0 r
r-htmltools 0.3.6 r342h4080c21_0 r
r-htmlwidgets 0.9 r342h7fcc9b6_0 r
r-httpuv 1.3.5 r342ha5ddd88_0 r
r-httr 1.3.1 r342h7aba7de_0 r
r-hwriter 1.3.2 r3.4.1_0 conda-forge
r-ipred 0.9_6 r342h7d58d5b_0 r
r-irdisplay 0.4.4 r342hc31a1b2_0 r
r-irkernel 0.8.9 r342hfe3cb8f_0 r
r-iterators 1.0.8 r342h4caec00_4 r
r-jsonlite 1.5 r342hf92f79e_0 r
r-kernlab 0.9_25 r342hd770e69_0 r
r-kernsmooth 2.23_15 r3.3.2_0
r-knitr 1.17 r342h6500ef9_0 r
r-labeling 0.3 r3.4.1_0 conda-forge
r-lambda.r 1.1.9 r3.4.1_0 conda-forge
r-lattice 0.20_34 r3.4.1_0 conda-forge
r-latticeextra 0.6_28 r3.4.1_0 conda-forge
r-lava 1.5.1 r342h598eca9_0 r
r-lazyeval 0.2.0 r3.4.1_0 conda-forge
r-lubridate 1.6.0 r342h47739ec_0 r
r-magrittr 1.5 r3.4.1_0 conda-forge
r-maps 3.2.0 r342h79c810f_0 r
r-markdown 0.8 r342h4cc6e3e_0 r
r-mass 7.3_45 r3.4.1_0 conda-forge
r-matrix 1.2_7.1 r3.4.1_0 conda-forge
r-matrixstats 0.52.2 r3.4.1_0 conda-forge
r-mgcv 1.8_16 r3.3.2_0
r-mime 0.5 r342h01856a9_0 r
r-mnormt 1.5_5 r342he1a489d_0 r
r-modelmetrics 1.1.0 r342h5a23eb1_0 r
r-modelr 0.1.1 r342heb933ea_0 r
r-munsell 0.4.3 r3.4.1_0 conda-forge
r-nlme 3.1_128 r3.3.2_0
r-nnet 7.3_12 r3.3.2_0
r-numderiv 2016.8_1 r342h12eb246_0 r
r-openssl 0.9.7 r342h1e3c16d_0 r
r-pbdzmq 0.2_6 r342h934a24f_0 r
r-pkgconfig 2.0.1 r342h5d9b92e_0 r
r-plogr 0.1_1 r342h6d7f4c2_0 r
r-plyr 1.8.4 r3.4.1_0 conda-forge
r-prodlim 1.6.1 r342hd95c883_0 r
r-pryr 0.1.2 r342hf3bf84b_0 r
r-psych 1.7.8 r342h1e2dc86_0 r
r-purrr 0.2.3 r342h7916a1c_0 r
r-quantmod 0.4_11 r342h9c9c021_0 r
r-r6 2.2.2 r342hcc750b5_0 r
r-randomforest 4.6_12 r342h41e62a9_4 r
r-rbokeh 0.5.0 r342h257354a_0 r
r-rcolorbrewer 1.1_2 r3.4.1_0 conda-forge
r-rcpp 0.12.13 r3.4.1_0 conda-forge
r-rcppparallel 4.3.20 r3.4.1_0 conda-forge
r-rcpproll 0.2.2 r342hdd0cc16_0 r
r-rcurl 1.95_4.8 r3.4.1_0 conda-forge
r-readr 1.1.1 r342hb25467c_0 r
r-readxl 1.0.0 r342h1e5739b_0 r
r-recipes 0.1.0 r342h0924b81_0 r
r-recommended 3.3.2 r3.3.2_0
r-rematch 1.0.1 r342he3f91f1_0 r
r-repr 0.12.0 r342hde08b23_0 r
r-reshape2 1.4.2 r3.4.1_0 conda-forge
r-rlang 0.1.2 r3.4.1_0 conda-forge
r-rmarkdown 1.6 r342hacd9e3e_2 r
r-robustbase 0.92_7 r342h6021a74_0 r
r-rpart 4.1_10 r3.3.2_0
r-rprojroot 1.2 r342hd69aa9e_0 r
r-rvest 0.3.2 r342h8e81af5_0 r
r-scales 0.4.1 r3.4.1_0 conda-forge
r-selectr 0.3_1 r342hd6c1ff9_0 r
r-sfsmisc 1.1_1 r342hadb04b4_0 r
r-shiny 1.0.5 r342hc0a01ce_0 r
r-snow 0.4_2 r3.4.1_0 conda-forge
r-sourcetools 0.1.6 r342h519fec0_0 r
r-spatial 7.3_11 r3.3.2_0
r-stringi 1.1.2 r3.4.1_0 conda-forge
r-stringr 1.2.0 r3.4.1_0 conda-forge
r-survival 2.40_1 r3.3.2_0
r-tibble 1.3.3 r3.4.1_0 conda-forge
r-tidyr 0.7.1 r342h1bc61e7_0 r
r-tidyselect 0.2.2 r342h04f720c_0 r
r-tidyverse 1.1.1 r342hf9e2102_0 r
r-timedate 3012.100 r342h48d2e88_4 r
r-ttr 0.23_2 r342hf82c04a_0 r
r-uuid 0.1_2 r342h1393287_4 r
r-withr 2.0.0 r342hfa1897f_0 r
r-xml2 1.1.1 r342h3ff9a91_0 r
r-xtable 1.8_2 r342hb75f6e7_0 r
r-xts 0.10_0 r342h17852d6_4 r
r-yaml 2.1.14 r342h72d8650_0 r
r-zoo 1.8_0 r342h9faeba2_0 r
readline 6.2 0 conda-forge
redbiom 0.1.0 <pip>
reportlab 3.4.0 <pip>
requests 2.18.4 py35_1 conda-forge
requests 2.18.3 <pip>
requests 2.13.0 <pip>
rsa 3.4.2 <pip>
s3transfer 0.1.10 <pip>
scikit-bio 0.5.1 py35_0 qiime2
scikit-learn 0.19.1 py35_blas_openblas_200 [blas_openblas] conda-forge
scipy 0.19.1 py35_blas_openblas_202 [blas_openblas] conda-forge
scipy 0.19.0 <pip>
scipy 0.19.1 <pip>
seaborn 0.8.1 py35_0 conda-forge
sentinels 1.0.0 <pip>
setuptools 38.4.0 py35_0 conda-forge
setuptools 36.6.0 <pip>
setuptools 36.2.7 <pip>
simplegeneric 0.8.1 py35_0 conda-forge
sip 4.18 py35_1 conda-forge
six 1.11.0 py35_1 conda-forge
sortmerna 2.0 1 bioconda
sourcetracker 2.0.1.dev0 <pip>
sqlite 3.13.0 1 conda-forge
statsmodels 0.8.0 py35_0 conda-forge
tensorflow 1.2.1 <pip>
terminado 0.8.1 py35_0 conda-forge
testpath 0.3.1 py35_0 conda-forge
testpath 0.3 <pip>
theano 0.9.0 py35_3 conda-forge
tk 8.5.19 2 conda-forge
tornado 4.5.3 py35_0 conda-forge
tqdm 4.19.4 <pip>
traitlets 4.3.2 py35_0 conda-forge
tzlocal 1.3 py35_0 qiime2
unifrac 0.9.2 py35hae32d81_1 biocore
uritemplate 3.0.0 <pip>
urllib3 1.22 py35_0 conda-forge
urllib3 1.22 <pip>
vsearch 2.6.0 0 bioconda
wcwidth 0.1.7 py35_0 conda-forge
webencodings 0.5.1 <pip>
webencodings 0.5 py35_0 conda-forge
Werkzeug 0.12.2 <pip>
wget 3.2 <pip>
wget 1.18 0
wheel 0.30.0 py35_2 conda-forge
widgetsnbextension 3.1.0 py35_0 conda-forge
widgetsnbextension 2.0.0 <pip>
xopen 0.3.2 py35_0 bioconda
xorg-libxau 1.0.8 3 conda-forge
xorg-libxdmcp 1.1.2 3 conda-forge
xz 5.2.3 0 conda-forge
yaml 0.1.6 0 conda-forge
zeromq 4.2.1 1 conda-forge
zlib 1.2.8 3 conda-forge
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