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library(mlrMBO) | |
library(data.table) | |
library(ggplot2) | |
configureMlr(on.par.without.desc = "warn") | |
set.seed(1) | |
# Define objective function | |
fn = makeRosenbrockFunction(5) | |
# define mbo control object | |
ctrl = makeMBOControl(propose.points = 4, store.model.at = 0:20) | |
ctrl = setMBOControlInfill(ctrl, crit = "ei") | |
ctrl = setMBOControlMultiPoint(ctrl, method = "cl", cl.lie = max) | |
ctrl = setMBOControlTermination(ctrl, iters = 6) | |
# surrogate learner | |
lrn = makeLearner("regr.km", nugget.stability = 10^-8, covtype = "matern5_2", predict.type = "se", multistart = 1) | |
# initial design n = sqrt(d) * 10 | |
des = generateDesign(par.set = smoof::getParamSet(fn), n = floor(10 * sqrt(getParamLengths(smoof::getParamSet(fn))))) | |
# start mbo | |
res = mbo(fn, design = des, learner = lrn, control = ctrl) | |
# evaluation | |
op.dt = as.data.table(res$opt.path) | |
# generates surrogate model for a given mbo-iteration (i.dob) and for a specific lie (i.lie) | |
# i.lie = 0 generates the model without any liar | |
reconstructModel = function(op.dt, i.dob = 3, i.lie = 1) { | |
base = op.dt[cumsum(dob == i.dob) <= i.lie + lie.length & dob <= i.dob | dob == 0] | |
base[cumsum(dob == i.dob) <= i.lie & dob == i.dob, y := replicate(i.lie, ctrl$multipoint.cl.lie(base[dob <= i.dob, y]))] | |
tsk.data = as.data.frame(base[, c(ctrl$y.name, getParamIds(smoof::getParamSet(fn), with.nr = TRUE, repeated = TRUE)) , with = FALSE]) | |
tsk = makeRegrTask(id = "base", data = tsk.data, target = ctrl$y.name) | |
mod = train(lrn, tsk) | |
mod | |
} | |
# function to simply check if the model only proposas constant values | |
checkModelConstant = function(mod) { | |
grid = generateDesign(n = 200, par.set = smoof::getParamSet(fn)) | |
#grid = generateGridDesign(par.set = smoof::getParamSet(fn), resolution = 100) | |
pred = predict(mod, newdata = grid) | |
sd(getPredictionResponse(pred)) < .Machine$double.eps ^ 0.5 | |
} | |
# generate all dob and lie combinations | |
dob.lie = expand.grid(lie = seq_len(ctrl$propose.points)-1, dob = unique(op.dt$dob)[-1]) | |
# add first model from init design | |
dob.lie = rbind(c(0,0), dob.lie) | |
was.constant = Map(function(lie, dob) { | |
mean(replicate(20, checkModelConstant(reconstructModel(op.dt, dob, lie)))) | |
}, | |
lie = dob.lie$lie, dob = dob.lie$dob) | |
dob.lie$fail = unlist(was.constant) | |
g = ggplot(dob.lie, aes (x = sprintf("%i;%i", dob, lie), y = fail, fill = lie==0)) | |
g + geom_bar(stat="identity") + xlab("dob; lie") + ggtitle("Kriging Failrate") |
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Sample Output