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Created January 7, 2019 18:40
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hpc-output.md 
jlittle at moosehead in ~/honors/5-tf-nbl-clean-setup
$ qrsh -l gpuk20=1 run.sh
Warning: Permanently added '[moose55]:46863,[139.140.230.205]:46863' (ECDSA) to the list of known hosts.
=========================================================================

  JBoss Bootstrap Environment

  JBOSS_HOME: /mnt/local/jboss/jboss-5.1.0.GA

  JAVA: /usr/java/default/bin/java

  JAVA_OPTS: -Dprogram.name=run.sh -server -Xms128m -Xmx512m -XX:MaxPermSize=256m -Dorg.jboss.resolver.warning=true -Dsun.rmi.dgc.client.gcInterval=3600000 -Dsun.rmi.dgc.server.gcInterval=3600000 -Djava.net.preferIPv4Stack=true

  CLASSPATH: /mnt/local/jboss/jboss-5.1.0.GA/bin/run.jar:/usr/java/default/lib/tools.jar

=========================================================================

Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=256m; support was removed in 8.0
log4j:ERROR Failed to create directory structure: /mnt/local/jboss/jboss-5.1.0.GA/server/default/log
log4j:ERROR setFile(null,false) call failed.
java.io.FileNotFoundException: /mnt/local/jboss/jboss-5.1.0.GA/server/default/log/boot.log (No such file or directory)
	at java.io.FileOutputStream.open0(Native Method)
	at java.io.FileOutputStream.open(FileOutputStream.java:270)
	at java.io.FileOutputStream.<init>(FileOutputStream.java:213)
	at java.io.FileOutputStream.<init>(FileOutputStream.java:133)
	at org.apache.log4j.FileAppender.setFile(FileAppender.java:289)
	at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:163)
	at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:256)
	at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:132)
	at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:96)
	at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:654)
	at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:612)
	at org.apache.log4j.PropertyConfigurator.configureRootCategory(PropertyConfigurator.java:509)
	at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:415)
	at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:441)
	at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:470)
	at org.apache.log4j.LogManager.<clinit>(LogManager.java:122)
	at org.jboss.logging.log4j.Log4jLoggerPlugin.init(Log4jLoggerPlugin.java:70)
	at org.jboss.logging.Logger.getDelegatePlugin(Logger.java:603)
	at org.jboss.logging.Logger.<init>(Logger.java:119)
	at org.jboss.logging.Logger.getLogger(Logger.java:567)
	at org.jboss.bootstrap.AbstractServerImpl.doInit(AbstractServerImpl.java:204)
	at org.jboss.bootstrap.AbstractServerImpl.init(AbstractServerImpl.java:173)
	at org.jboss.bootstrap.AbstractServerImpl.init(AbstractServerImpl.java:143)
	at org.jboss.Main.boot(Main.java:218)
	at org.jboss.Main$1.run(Main.java:556)
	at java.lang.Thread.run(Thread.java:748)
13:36:56,400 INFO  [ServerImpl] Starting JBoss (Microcontainer)...
13:36:56,401 INFO  [ServerImpl] Release ID: JBoss [The Oracle] 5.1.0.GA (build: SVNTag=JBoss_5_1_0_GA date=200905221634)
13:36:56,401 INFO  [ServerImpl] Bootstrap URL: null
13:36:56,401 INFO  [ServerImpl] Home Dir: /mnt/local/jboss/jboss-5.1.0.GA
13:36:56,402 INFO  [ServerImpl] Home URL: file:/mnt/local/jboss/jboss-5.1.0.GA/
13:36:56,402 INFO  [ServerImpl] Library URL: file:/mnt/local/jboss/jboss-5.1.0.GA/lib/
13:36:56,403 INFO  [ServerImpl] Patch URL: null
13:36:56,403 INFO  [ServerImpl] Common Base URL: file:/mnt/local/jboss/jboss-5.1.0.GA/common/
13:36:56,403 INFO  [ServerImpl] Common Library URL: file:/mnt/local/jboss/jboss-5.1.0.GA/common/lib/
13:36:56,404 INFO  [ServerImpl] Server Name: default
13:36:56,404 INFO  [ServerImpl] Server Base Dir: /mnt/local/jboss/jboss-5.1.0.GA/server
13:36:56,404 INFO  [ServerImpl] Server Base URL: file:/mnt/local/jboss/jboss-5.1.0.GA/server/
13:36:56,404 INFO  [ServerImpl] Server Config URL: file:/mnt/local/jboss/jboss-5.1.0.GA/server/default/conf/
13:36:56,404 INFO  [ServerImpl] Server Home Dir: /mnt/local/jboss/jboss-5.1.0.GA/server/default
13:36:56,404 INFO  [ServerImpl] Server Home URL: file:/mnt/local/jboss/jboss-5.1.0.GA/server/default/
13:36:56,405 INFO  [ServerImpl] Server Data Dir: /mnt/local/jboss/jboss-5.1.0.GA/server/default/data
13:36:56,406 INFO  [ServerImpl] Server Library URL: file:/mnt/local/jboss/jboss-5.1.0.GA/server/default/lib/
13:36:56,407 INFO  [ServerImpl] Server Log Dir: /mnt/local/jboss/jboss-5.1.0.GA/server/default/log
13:36:56,407 INFO  [ServerImpl] Server Native Dir: /mnt/local/jboss/jboss-5.1.0.GA/server/default/tmp/native
13:36:56,407 INFO  [ServerImpl] Server Temp Dir: /mnt/local/jboss/jboss-5.1.0.GA/server/default/tmp
13:36:56,407 INFO  [ServerImpl] Server Temp Deploy Dir: /mnt/local/jboss/jboss-5.1.0.GA/server/default/tmp/deploy
13:36:57,284 INFO  [ServerImpl] Starting Microcontainer, bootstrapURL=file:/mnt/local/jboss/jboss-5.1.0.GA/server/default/conf/bootstrap.xml
13:36:58,136 INFO  [VFSCacheFactory] Initializing VFSCache [org.jboss.virtual.plugins.cache.CombinedVFSCache]
13:36:58,138 INFO  [VFSCacheFactory] Using VFSCache [CombinedVFSCache[real-cache: null]]
13:36:58,573 INFO  [CopyMechanism] VFS temp dir: /mnt/local/jboss/jboss-5.1.0.GA/server/default/tmp
13:36:58,574 INFO  [ZipEntryContext] VFS force nested jars copy-mode is enabled.
13:36:58,978 ERROR [AbstractKernelController] Error installing to Create: name=AspectManager state=Configured
java.io.FileNotFoundException: Failed to create tmpClassesDir: /mnt/local/jboss/jboss-5.1.0.GA/server/default/tmp/aopdynclasses
	at org.jboss.aop.asintegration.core.AspectManagerServiceDelegate.create(AspectManagerServiceDelegate.java:237)
	at org.jboss.aop.deployers.AbstractAspectManager.create(AbstractAspectManager.java:89)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:498)
	at org.jboss.reflect.plugins.introspection.ReflectionUtils.invoke(ReflectionUtils.java:59)
	at org.jboss.reflect.plugins.introspection.ReflectMethodInfoImpl.invoke(ReflectMethodInfoImpl.java:150)
	at org.jboss.joinpoint.plugins.BasicMethodJoinPoint.dispatch(BasicMethodJoinPoint.java:66)
	at org.jboss.kernel.plugins.dependency.KernelControllerContextAction$JoinpointDispatchWrapper.execute(KernelControllerContextAction.java:241)
	at org.jboss.kernel.plugins.dependency.ExecutionWrapper.execute(ExecutionWrapper.java:47)
	at org.jboss.kernel.plugins.dependency.KernelControllerContextAction.dispatchExecutionWrapper(KernelControllerContextAction.java:109)
	at org.jboss.kernel.plugins.dependency.KernelControllerContextAction.dispatchJoinPoint(KernelControllerContextAction.java:70)
	at org.jboss.kernel.plugins.dependency.LifecycleAction.installActionInternal(LifecycleAction.java:221)
	at org.jboss.kernel.plugins.dependency.InstallsAwareAction.installAction(InstallsAwareAction.java:54)
	at org.jboss.kernel.plugins.dependency.InstallsAwareAction.installAction(InstallsAwareAction.java:42)
	at org.jboss.dependency.plugins.action.SimpleControllerContextAction.simpleInstallAction(SimpleControllerContextAction.java:62)
	at org.jboss.dependency.plugins.action.AccessControllerContextAction.install(AccessControllerContextAction.java:71)
	at org.jboss.dependency.plugins.AbstractControllerContextActions.install(AbstractControllerContextActions.java:51)
	at org.jboss.dependency.plugins.AbstractControllerContext.install(AbstractControllerContext.java:348)
	at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:1631)
	at org.jboss.dependency.plugins.AbstractController.incrementState(AbstractController.java:934)
	at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:1082)
	at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:984)
	at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:774)
	at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:540)
	at org.jboss.kernel.plugins.deployment.AbstractKernelDeployer.deployBean(AbstractKernelDeployer.java:319)
	at org.jboss.kernel.plugins.deployment.AbstractKernelDeployer.deployBeans(AbstractKernelDeployer.java:297)
	at org.jboss.kernel.plugins.deployment.AbstractKernelDeployer.deploy(AbstractKernelDeployer.java:130)
	at org.jboss.kernel.plugins.deployment.BasicKernelDeployer.deploy(BasicKernelDeployer.java:76)
	at org.jboss.bootstrap.microcontainer.TempBasicXMLDeployer.deploy(TempBasicXMLDeployer.java:91)
	at org.jboss.bootstrap.microcontainer.TempBasicXMLDeployer.deploy(TempBasicXMLDeployer.java:161)
	at org.jboss.bootstrap.microcontainer.ServerImpl.doStart(ServerImpl.java:138)
	at org.jboss.bootstrap.AbstractServerImpl.start(AbstractServerImpl.java:450)
	at org.jboss.Main.boot(Main.java:221)
	at org.jboss.Main$1.run(Main.java:556)
	at java.lang.Thread.run(Thread.java:748)
13:37:00,020 INFO  [ServerInfo] Java version: 1.8.0_191,Oracle Corporation
13:37:00,020 INFO  [ServerInfo] Java Runtime: Java(TM) SE Runtime Environment (build 1.8.0_191-b12)
13:37:00,020 INFO  [ServerInfo] Java VM: Java HotSpot(TM) 64-Bit Server VM 25.191-b12,Oracle Corporation
13:37:00,020 INFO  [ServerInfo] OS-System: Linux 3.10.0-957.1.3.el7.x86_64,amd64
13:37:00,021 INFO  [ServerInfo] VM arguments: -Dprogram.name=run.sh -Xms128m -Xmx512m -XX:MaxPermSize=256m -Dorg.jboss.resolver.warning=true -Dsun.rmi.dgc.client.gcInterval=3600000 -Dsun.rmi.dgc.server.gcInterval=3600000 -Djava.net.preferIPv4Stack=true -Djava.endorsed.dirs=/mnt/local/jboss/jboss-5.1.0.GA/lib/endorsed
13:37:00,073 INFO  [JMXKernel] Legacy JMX core initialized
13:37:01,566 ERROR [AbstractKernelController] Error installing to Instantiated: name=AttachmentStore state=Described
java.lang.IllegalArgumentException: Wrong arguments. new for target java.lang.reflect.Constructor expected=[java.net.URI] actual=[java.io.File]
	at org.jboss.reflect.plugins.introspection.ReflectionUtils.handleErrors(ReflectionUtils.java:395)
	at org.jboss.reflect.plugins.introspection.ReflectionUtils.newInstance(ReflectionUtils.java:153)
	at org.jboss.reflect.plugins.introspection.ReflectConstructorInfoImpl.newInstance(ReflectConstructorInfoImpl.java:106)
	at org.jboss.joinpoint.plugins.BasicConstructorJoinPoint.dispatch(BasicConstructorJoinPoint.java:80)
	at org.jboss.aop.microcontainer.integration.AOPConstructorJoinpoint.createTarget(AOPConstructorJoinpoint.java:282)
	at org.jboss.aop.microcontainer.integration.AOPConstructorJoinpoint.dispatch(AOPConstructorJoinpoint.java:103)
	at org.jboss.kernel.plugins.dependency.KernelControllerContextAction$JoinpointDispatchWrapper.execute(KernelControllerContextAction.java:241)
	at org.jboss.kernel.plugins.dependency.ExecutionWrapper.execute(ExecutionWrapper.java:47)
	at org.jboss.kernel.plugins.dependency.KernelControllerContextAction.dispatchExecutionWrapper(KernelControllerContextAction.java:109)
	at org.jboss.kernel.plugins.dependency.KernelControllerContextAction.dispatchJoinPoint(KernelControllerContextAction.java:70)
	at org.jboss.kernel.plugins.dependency.InstantiateAction.installActionInternal(InstantiateAction.java:66)
	at org.jboss.kernel.plugins.dependency.InstallsAwareAction.installAction(InstallsAwareAction.java:54)
	at org.jboss.kernel.plugins.dependency.InstallsAwareAction.installAction(InstallsAwareAction.java:42)
	at org.jboss.dependency.plugins.action.SimpleControllerContextAction.simpleInstallAction(SimpleControllerContextAction.java:62)
	at org.jboss.dependency.plugins.action.AccessControllerContextAction.install(AccessControllerContextAction.java:71)
	at org.jboss.dependency.plugins.AbstractControllerContextActions.install(AbstractControllerContextActions.java:51)
	at org.jboss.dependency.plugins.AbstractControllerContext.install(AbstractControllerContext.java:348)
	at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:1631)
	at org.jboss.dependency.plugins.AbstractController.incrementState(AbstractController.java:934)
	at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:1082)
	at org.jboss.dependency.plugins.AbstractController.resolveContexts(AbstractController.java:984)
	at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:774)
	at org.jboss.dependency.plugins.AbstractController.install(AbstractController.java:540)
	at org.jboss.kernel.plugins.deployment.AbstractKernelDeployer.deployBean(AbstractKernelDeployer.java:319)
	at org.jboss.kernel.plugins.deployment.AbstractKernelDeployer.deployBeans(AbstractKernelDeployer.java:297)
	at org.jboss.kernel.plugins.deployment.AbstractKernelDeployer.deploy(AbstractKernelDeployer.java:130)
	at org.jboss.kernel.plugins.deployment.BasicKernelDeployer.deploy(BasicKernelDeployer.java:76)
	at org.jboss.bootstrap.microcontainer.TempBasicXMLDeployer.deploy(TempBasicXMLDeployer.java:91)
	at org.jboss.bootstrap.microcontainer.TempBasicXMLDeployer.deploy(TempBasicXMLDeployer.java:161)
	at org.jboss.bootstrap.microcontainer.ServerImpl.doStart(ServerImpl.java:138)
	at org.jboss.bootstrap.AbstractServerImpl.start(AbstractServerImpl.java:450)
	at org.jboss.Main.boot(Main.java:221)
	at org.jboss.Main$1.run(Main.java:556)
	at java.lang.Thread.run(Thread.java:748)
Failed to boot JBoss:
java.lang.IllegalStateException: Incompletely deployed:

DEPLOYMENTS IN ERROR:
  Deployment "AspectManager" is in error due to: java.io.FileNotFoundException: Failed to create tmpClassesDir: /mnt/local/jboss/jboss-5.1.0.GA/server/default/tmp/aopdynclasses
  Deployment "AttachmentStore" is in error due to: java.lang.IllegalArgumentException: Wrong arguments. new for target java.lang.reflect.Constructor expected=[java.net.URI] actual=[java.io.File]

DEPLOYMENTS MISSING DEPENDENCIES:
  Deployment "JMXStartStopAdvice$AspectBinding" is missing the following dependencies:
    Dependency "AspectManager" (should be in state "Installed", but is actually in state "**ERROR**")
  Deployment "AspectManagerJMXRegistrar" is missing the following dependencies:
    Dependency "AspectManager" (should be in state "Installed", but is actually in state "**ERROR**")
  Deployment "BeansDeploymentAopMetaDataDeployer" is missing the following dependencies:
    Dependency "AspectManager" (should be in state "Installed", but is actually in state "**ERROR**")
    Dependency "jboss.kernel:service=Kernel" (should be in state "Installed", but is actually in state "**ERROR**")
  Deployment "ProfileServicePersistenceDeployer" is missing the following dependencies:
    Dependency "AttachmentStore" (should be in state "Installed", but is actually in state "**ERROR**")
  Deployment "AOPDeploymentAopMetaDataDeployer" is missing the following dependencies:
    Dependency "jboss.kernel:service=Kernel" (should be in state "Installed", but is actually in state "**ERROR**")
    Dependency "AspectManager" (should be in state "Installed", but is actually in state "**ERROR**")
  Deployment "JMXRegistrationAdvice$AspectBinding" is missing the following dependencies:
    Dependency "AspectManager" (should be in state "Installed", but is actually in state "**ERROR**")
  Deployment "ProfileServiceBootstrap" is missing the following dependencies:
    Dependency "ProfileService" (should be in state "Installed", but is actually in state "Instantiated")
    Dependency "jboss.kernel:service=Kernel" (should be in state "Installed", but is actually in state "**ERROR**")
  Deployment "ProfileService" is missing the following dependencies:
    Dependency "jboss.kernel:service=KernelController" (should be in state "Installed", but is actually in state "**ERROR**")
    Dependency "ProfileServiceDeployer" (should be in state "Installed", but is actually in state "Instantiated")
  Deployment "JMXCreateDestroyAdvice$AspectBinding" is missing the following dependencies:
    Dependency "AspectManager" (should be in state "Installed", but is actually in state "**ERROR**")
  Deployment "AOPClassLoaderDeployer" is missing the following dependencies:
    Dependency "AspectManager" (should be in state "Installed", but is actually in state "**ERROR**")
  Deployment "ProfileServiceDeployer" is missing the following dependencies:
    Dependency "AttachmentStore" (should be in state "Installed", but is actually in state "**ERROR**")

	at org.jboss.kernel.plugins.deployment.AbstractKernelDeployer.internalValidate(AbstractKernelDeployer.java:278)
	at org.jboss.kernel.plugins.deployment.AbstractKernelDeployer.validate(AbstractKernelDeployer.java:174)
	at org.jboss.bootstrap.microcontainer.ServerImpl.doStart(ServerImpl.java:142)
	at org.jboss.bootstrap.AbstractServerImpl.start(AbstractServerImpl.java:450)
	at org.jboss.Main.boot(Main.java:221)
	at org.jboss.Main$1.run(Main.java:556)
	at java.lang.Thread.run(Thread.java:748)
13:37:01,977 INFO  [ServerImpl] Runtime shutdown hook called, forceHalt: true
13:37:01,980 INFO  [ServerImpl] Shutdown complete
Shutdown complete
Halting VM
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