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jamesqo/msk-tentative-roadmap.md

Last active June 22, 2023 04:32
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msk-tentative-roadmap.md
  • Understand the different types of clinical data available from GDC
    • Expected timeframe: 1-2 weeks
    • Deliverable: Google Doc / Markdown doc explaining all of them
  • Decide which of these clinical data fields we'd like to fetch
    • Expected timeframe: 1 week
    • Deliverable: Updated Google doc / Markdown
  • Understand the genomic data present in GDC and decide which ones to fetch
    • Expected timeframe: 2 weeks
    • Deliverable: Google Doc / Markdown
  • Familiarize self with CDA
    • Expected timeframe: 2 weeks
    • Deliverable: build a tiny app / Jupyter notebook that demonstrates some functionality from the library
  • Create the cohort builder library
    • Expected timeframe: 2-4 weeks
  • Understand the cBioPortal input file format
    • Expected timeframe: 1-2 weeks
  • Familiarize self with other stuff on the side that will be useful down the line, eg. Apache Airflow, molecular biology basics
    • Over time
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