P-0005078-T03-IM7

json_snippet.json

    "meta-data" : {
      "alys2sample_id" : 98172,
      "cbx_patient_id" : 5042,
      "cbx_sample_id" : 85960,
      "date_tumor_sequencing" : "Wed, 11 Nov 2020 14:20:50 GMT",
      "dmp_alys_task_id" : 7293,
      "dmp_alys_task_name" : "IMPACTv7-CLIN-20200586",
      "dmp_patient_id" : "P-0005078",
      "dmp_sample_id" : "P-0005078-T03-IM7",
      "dmp_sample_so_id" : 88202,
      "gender" : 1, 
      "gene-panel" : "IMPACT505",
      "is_metastasis" : 1,
      "legacy_patient_id" : "N/A",
      "legacy_sample_id" : "N/A",
      "metastasis_site" : "Bone",
      "msi-comment" : "MICROSATELLITE STABLE (MSS). See MSI note below.",
      "msi-score" : "0.15",
      "msi-type" : "Stable",
      "outside_institute" : "MSKCC",
      "primary_site" : "Prostate",
      "retrieve_status" : 11,
      "sample_coverage" : 739,
      "so_comments" : "Note: Low tumor content (approximately 20% or less). Negative mutation, copy number, and structural variant results, as well as low (stable) MSIsensor scores and low tumor mutation burden (TMB), should be interpreted with caution.\nNote: This tumor sample is clonally related to the patient\\'s previous sample, M15-9640 and M16-9033.",
      "so_status_name" : "SIGNOUT_FINALIZED",
      "somatic_status" : "Matched",
      "tmb_cohort_percentile" : 18.0,
      "tmb_score" : 1.6,
      "tmb_tt_percentile" : 29.6,
      "tumor_purity" : "10",
      "tumor_type_code" : "PRAD",
      "tumor_type_name" : "Prostate Adenocarcinoma",
      "consent-parta" : "YES",

test_output.log

P-0001281-T05-IM7
P-0011248-T03-IM6
P-0012335-T02-IM7
P-0000004-T01-IM3
P-0000857-T01-IM3
P-0001901-T01-IM3
P-0003319-T01-IM5
P-0005078-T03-IM7
P-0005404-T01-IM5
P-0013121-T05-IM6
P-0016733-T03-IM6
P-0017319-T04-IM6
P-0022724-T02-IM6
P-0023858-T01-IM6
P-0025907-N01-IM6
P-0027636-T01-IM6
P-0028912-T01-IM6
P-0031640-T01-IM6
P-0033004-T01-IM6
P-0047847-T01-IM6
P-0047847-T04-IM6
P-0060369-T01-IM7
P-0068972-T01-IM7
P-0068981-T01-IM7
P-0072534-T02-IM7
P-0074052-T02-IM7
P-0077050-T01-IM7
P-0077660-T01-IM7
P-0079204-T01-IM7
P-0080336-T01-IM7
P-0081657-T01-IM7
P-0082253-T01-IM7
P-0083825-T01-IM7
setSEQ_DATE called
P-0001281-T05-IM7
setSEQ_DATE called
P-0011248-T03-IM6
setSEQ_DATE called
P-0012335-T02-IM7
setSEQ_DATE called
P-0000004-T01-IM3
setSEQ_DATE called
P-0000857-T01-IM3
setSEQ_DATE called
P-0001901-T01-IM3
setSEQ_DATE called
P-0003319-T01-IM5
setSEQ_DATE called
P-0005078-T03-IM7
setSEQ_DATE called
P-0005404-T01-IM5
setSEQ_DATE called
P-0013121-T05-IM6
setSEQ_DATE called
P-0016733-T03-IM6
setSEQ_DATE called
P-0017319-T04-IM6
setSEQ_DATE called
P-0022724-T02-IM6
setSEQ_DATE called
P-0023858-T01-IM6
setSEQ_DATE called
P-0025907-N01-IM6
setSEQ_DATE called
P-0027636-T01-IM6
setSEQ_DATE called
P-0028912-T01-IM6
setSEQ_DATE called
P-0031640-T01-IM6
setSEQ_DATE called
P-0033004-T01-IM6
setSEQ_DATE called
P-0047847-T01-IM6
setSEQ_DATE called
P-0047847-T04-IM6
setSEQ_DATE called
P-0060369-T01-IM7
setSEQ_DATE called
P-0068972-T01-IM7
setSEQ_DATE called
P-0068981-T01-IM7
setSEQ_DATE called
P-0072534-T02-IM7
setSEQ_DATE called
P-0074052-T02-IM7
setSEQ_DATE called
P-0077050-T01-IM7
setSEQ_DATE called
P-0077660-T01-IM7
setSEQ_DATE called
P-0079204-T01-IM7
setSEQ_DATE called
P-0080336-T01-IM7
setSEQ_DATE called
P-0081657-T01-IM7
setSEQ_DATE called
P-0082253-T01-IM7
setSEQ_DATE called
P-0083825-T01-IM7