View cupy_dataloader.py
| import torch | |
| # cupy fails to import when there are no GPUs. This check means that the module can | |
| # still be imported in that case, but of course the classes won't work. | |
| if torch.cuda.is_available(): | |
| import cupy | |
| from torch.utils.data import DataLoader, Dataset | |
| from torch.utils.dlpack import from_dlpack |
jamestwebber
/ filter_fastq.py
Created Jun 28, 2019
Filters fastq files for a given list of 20bp guide sequences and outputs a count file
View filter_fastq.py
| #!/usr/bin/env python3 | |
| import argparse | |
| import gzip | |
| import itertools | |
| import os | |
| import multiprocessing | |
| from collections import Counter, defaultdict |
jamestwebber
/ apply_example.ipynb
Last active Jan 14, 2019
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jamestwebber
/ pyro_logistic_regression.ipynb
Created Oct 23, 2018
A iPython notebook showing how to use SVI for logistic regression in Pyro
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jamestwebber
/ pyro_scvi.ipynb
Created Sep 17, 2018
the scVI VAE model, but using Pyro-PPL for inference
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jamestwebber
/ nanopore_packer_build.log
Created Jan 31, 2018
Log of `PACKER_LOG=1 packer build nanopore.json`
View nanopore_packer_build.log
| ➜ packer-images git:(specops) ✗ PACKER_LOG=1 packer build -force nanopore.json | |
| 2018/01/30 19:06:30 [INFO] Packer version: 1.1.0 | |
| 2018/01/30 19:06:30 Packer Target OS/Arch: darwin amd64 | |
| 2018/01/30 19:06:30 Built with Go Version: go1.9 | |
| 2018/01/30 19:06:30 Detected home directory from env var: /Users/james.webber | |
| 2018/01/30 19:06:30 Using internal plugin for vmware-iso | |
| 2018/01/30 19:06:30 Using internal plugin for vmware-vmx | |
| 2018/01/30 19:06:30 Using internal plugin for googlecompute | |
| 2018/01/30 19:06:30 Using internal plugin for hyperv-iso | |
| 2018/01/30 19:06:30 Using internal plugin for parallels-pvm |
jamestwebber
/ wilensky.ipynb
Last active Jun 21, 2017
A Python Notebook for Wilensky's fairness illusion exercise
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jamestwebber
/ qrcard notebook.ipynb
Last active Jul 15, 2019
A Jupyter notebook for making qrcodes out of existing images and adding a URL. Fixed to 41x41 (version 6) images. Depends on numpy, scipy, matplotlib, Pillow, and python-qrcode.
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