Example of how to place extra custom JavaScript after the wp_footer and before the closing body tag

gistfile1.html

            </div>
        </div>
    </div>
    <!-- /Footer --> 
<?php wp_footer(); ?>

<script type="text/javascript">
    jQuery(document).ready(function(){ 
        jQuery('.slidedeck-frame').bind('mouseenter', function(){ 
            jQuery('.slidedeck').slidedeck().pauseAutoPlay = true; 
        }); 
        jQuery('.slidedeck-frame').bind('mouseleave', function(){ 
            jQuery('.slidedeck').slidedeck().pauseAutoPlay = false; 
        }); 
    });
</script>

</body>
</html>