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Sinkhorn Optimal Transport Algorithm in PyTorch
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import torch | |
@torch.jit.script | |
def log_optimal_transport(Z, iters: int): | |
m, n = Z.shape | |
log_mu = -torch.tensor(m).to(Z).log().expand(Z.shape[:-2] + [m]) | |
log_nu = -torch.tensor(n).to(Z).log().expand(Z.shape[:-2] + [n]) | |
u, v = torch.zeros_like(log_mu), torch.zeros_like(log_nu) | |
for _ in range(iters): | |
v = log_nu - torch.logsumexp(Z + u.unsqueeze(-1), dim=-2) | |
u = log_mu - torch.logsumexp(Z + v.unsqueeze(-2), dim=-1) | |
return Z + u.unsqueeze(-1) + v.unsqueeze(-2) | |
# Example | |
# Define score (note: score = -cost) | |
score = torch.tensor([ | |
[5.0, -5.0, 5.0, 0.0, 0.0], | |
[0.0, 5.0, -5.0, 5.0, 0.0], | |
[0.0, 0.0, 5.0, -5.0, 5.0], | |
[0.0, 0.0, 0.0, 5.0, -5.0], | |
[0.0, 0.0, 0.0, 0.0, 5.0], | |
]) | |
# Calculate optimal transport in log space | |
log_T = log_optimal_transport(score, 32) | |
# The optimal flow/transport is then T | |
T = log_T.exp() | |
print(T) | |
# [[0.1619, 0.0000, 0.0379, 0.0001, 0.0001], | |
# [0.0017, 0.1750, 0.0000, 0.0231, 0.0001], | |
# [0.0044, 0.0030, 0.1546, 0.0000, 0.0379], | |
# [0.0130, 0.0089, 0.0030, 0.1750, 0.0000], | |
# [0.0190, 0.0130, 0.0044, 0.0017, 0.1619]] | |
print("Col sum = {}".format(T.sum(-1))) | |
# Col sum = tensor([0.2000, 0.2000, 0.2000, 0.2000, 0.2000]) | |
print("Row sum = {}".format(T.sum(-2))) | |
# Row sum = tensor([0.2000, 0.2000, 0.2000, 0.2000, 0.2000]) | |
# Earth movers distance is given by | |
EMD = torch.sum(cost * T) | |
print("EMD = {}".format(EMD)) | |
# EMD = 4.637098789215088 |
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