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## boxplot_magrittr.ipynb

      
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                janxkoci
                / boxplot_magrittr.ipynb
            
            
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              October 23, 2019 09:50
            
              
                This short tutorial shows an example of how to make boxplots with help of the magrittr package, with additional features (e.g. means)
              
          
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## plink_pruning_prep.sh
#!/bin/bash

# SCRIPT USAGE:
# bash plink_pruning_prep.sh filtered_snp_file.vcf

# REQUIREMENTS:
# This script uses several software packages, all available from [Bioconda channel](https://bioconda.github.io/).
# They can be installed with simple:
# conda install tabix bcftools plink

## unfold_fasta.sh
#!/bin/bash

FASTA="$1"
awk 'ORS = $1~/>/ ? RS:FS' $FASTA | sed 's/ >/\n>/g' | sed '2~2s/ //g'
	#!/bin/bash

	# SCRIPT USAGE:
	# bash plink_pruning_prep.sh filtered_snp_file.vcf

	# REQUIREMENTS:
	# This script uses several software packages, all available from [Bioconda channel](https://bioconda.github.io/).
	# They can be installed with simple:
	# conda install tabix bcftools plink
	#!/bin/bash

	FASTA="$1"
	awk 'ORS = $1~/>/ ? RS:FS' $FASTA \| sed 's/ >/\n>/g' \| sed '2~2s/ //g'