I hereby claim:
- I am jashapiro on github.
- I am jashapiro (https://keybase.io/jashapiro) on keybase.
- I have a public key ASCSbMp9DRc1hDGv-HZEDtfwPxUIqO9EJTGSgtq1p7KTSQo
To claim this, I am signing this object:
--- | |
title: "Test" | |
output: html_notebook | |
--- | |
Make some vectors | |
```{r} | |
abc <- c("a", "b", "c") | |
nums <- 1:3 |
get_ena_ftp <- function(SRA_project){ | |
ena_url <- stringr::str_interp("http://www.ebi.ac.uk/ena/data/warehouse/filereport?accession=${SRA_project}&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes") | |
ena_table <- readr::read_tsv(ena_url) %>% | |
tidyr::separate_rows(fastq_ftp, fastq_md5, fastq_bytes, sep = ";") | |
} |
I hereby claim:
To claim this, I am signing this object:
# removing files from galaxyIndices that we don't need. | |
# I'm going to create a very minimal version; no vertebrates | |
declare -a DELETE_GENOMES=( | |
blastdb/htgs | |
blastdb/wgs | |
Amellifera_Honeybee | |
Athaliana | |
Btaurus | |
Celegans/WS200 |