jaudoux jaudoux

## Snakefile
RAW_DIR = "raw"

SAMPLES = ['SRR2966453', 'SRR2966456','SRR2966471','SRR2966474', 'SRR2966454', 'SRR2966457', 'SRR2966472', 'SRR2966475', 'SRR2966455', 'SRR2966458', 'SRR2966473', 'SRR2966476']

rule all:
  input: "raw_counts.tsv.gz.gbi"

rule jellyfish_counts:
  input:
    r1 = RAW_DIR + "/{sample}_1.fastq.gz",

## sampleTosampleJaccardIndex.pl
#! /usr/bin/perl
#
use strict;
use warnings;

my %jaccard_h;
while(<>) {
  chomp;
  my($k,@v) = split "\t", $_;
  for(my $i = 0; $i < scalar @v; $i++) {

## gitio-test
# Testing gist.io
is-it cool?
	RAW_DIR = "raw"

	SAMPLES = ['SRR2966453', 'SRR2966456','SRR2966471','SRR2966474', 'SRR2966454', 'SRR2966457', 'SRR2966472', 'SRR2966475', 'SRR2966455', 'SRR2966458', 'SRR2966473', 'SRR2966476']

	rule all:
	input: "raw_counts.tsv.gz.gbi"

	rule jellyfish_counts:
	input:
	r1 = RAW_DIR + "/{sample}_1.fastq.gz",
	#! /usr/bin/perl
	#
	use strict;
	use warnings;

	my %jaccard_h;
	while(<>) {
	chomp;
	my($k,@v) = split "\t", $_;
	for(my $i = 0; $i < scalar @v; $i++) {