Created
June 20, 2016 13:22
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RXapian build failure
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orestes:xapian jaylett$ R CMD build RXapian | |
* checking for file ‘RXapian/DESCRIPTION’ ... OK | |
* preparing ‘RXapian’: | |
* checking DESCRIPTION meta-information ... OK | |
* cleaning src | |
* installing the package to process help pages | |
----------------------------------- | |
* installing *source* package ‘RXapian’ ... | |
checking for xapian-config-1.3... /usr/local/bin/xapian-config-1.3 | |
configure: creating ./config.status | |
config.status: creating src/Makevars | |
** libs | |
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/jaylett/Library/R/3.3/library/Rcpp/include" -I/usr/local/include/xapian-1.3 -fPIC -Wall -mtune=core2 -g -O2 -c DatabaseWrapper.cpp -o DatabaseWrapper.o | |
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/jaylett/Library/R/3.3/library/Rcpp/include" -I/usr/local/include/xapian-1.3 -fPIC -Wall -mtune=core2 -g -O2 -c IndexingWrapper.cpp -o IndexingWrapper.o | |
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/jaylett/Library/R/3.3/library/Rcpp/include" -I/usr/local/include/xapian-1.3 -fPIC -Wall -mtune=core2 -g -O2 -c RcppExports.cpp -o RcppExports.o | |
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Users/jaylett/Library/R/3.3/library/Rcpp/include" -I/usr/local/include/xapian-1.3 -fPIC -Wall -mtune=core2 -g -O2 -c SearchWrapper.cpp -o SearchWrapper.o | |
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o RXapian.so DatabaseWrapper.o IndexingWrapper.o RcppExports.o SearchWrapper.o -L/usr/local/lib -lxapian-1.3 -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation | |
installing to /private/var/folders/2s/k3ps1bmx2hl6fgrxsmpj_12r0000gn/T/Rtmpm4rdnY/Rinst7c3560ca2dfa/RXapian/libs | |
** R | |
** preparing package for lazy loading | |
** help | |
Warning: /private/var/folders/2s/k3ps1bmx2hl6fgrxsmpj_12r0000gn/T/Rtmpm4rdnY/Rbuild7c35b5e5f6a/RXapian/man/RXapian-package.Rd:26: All text must be in a section | |
Warning: /private/var/folders/2s/k3ps1bmx2hl6fgrxsmpj_12r0000gn/T/Rtmpm4rdnY/Rbuild7c35b5e5f6a/RXapian/man/RXapian-package.Rd:27: All text must be in a section | |
*** installing help indices | |
** building package indices | |
** testing if installed package can be loaded | |
Error in dyn.load(file, DLLpath = DLLpath, ...) : | |
unable to load shared object '/private/var/folders/2s/k3ps1bmx2hl6fgrxsmpj_12r0000gn/T/Rtmpm4rdnY/Rinst7c3560ca2dfa/RXapian/libs/RXapian.so': | |
dlopen(/private/var/folders/2s/k3ps1bmx2hl6fgrxsmpj_12r0000gn/T/Rtmpm4rdnY/Rinst7c3560ca2dfa/RXapian/libs/RXapian.so, 6): Symbol not found: __Z5indexRN4Rcpp6VectorILi16ENS_15PreserveStorageEEERNS_14DataFrame_ImplIS1_EERNS0_ILi14ES1_EERNS0_ILi19ES1_EES3_ | |
Referenced from: /private/var/folders/2s/k3ps1bmx2hl6fgrxsmpj_12r0000gn/T/Rtmpm4rdnY/Rinst7c3560ca2dfa/RXapian/libs/RXapian.so | |
Expected in: flat namespace | |
in /private/var/folders/2s/k3ps1bmx2hl6fgrxsmpj_12r0000gn/T/Rtmpm4rdnY/Rinst7c3560ca2dfa/RXapian/libs/RXapian.so | |
Error: loading failed | |
Execution halted | |
ERROR: loading failed | |
* removing ‘/private/var/folders/2s/k3ps1bmx2hl6fgrxsmpj_12r0000gn/T/Rtmpm4rdnY/Rinst7c3560ca2dfa/RXapian’ | |
----------------------------------- | |
ERROR: package installation failed |
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