Created
June 9, 2020 08:57
-
-
Save jazberna1/4b4ca9cba42753c5ca884687574b2e05 to your computer and use it in GitHub Desktop.
GATK liftover ticket
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
chr1 | |
chr10 | |
chr10_GL383545v1_alt | |
chr10_GL383546v1_alt | |
chr10_KI270824v1_alt | |
chr10_KI270825v1_alt | |
chr11 | |
chr11_GL383547v1_alt | |
chr11_JH159136v1_alt | |
chr11_JH159137v1_alt | |
chr11_KI270721v1_random | |
chr11_KI270826v1_alt | |
chr11_KI270827v1_alt | |
chr11_KI270829v1_alt | |
chr11_KI270830v1_alt | |
chr11_KI270831v1_alt | |
chr11_KI270832v1_alt | |
chr11_KI270902v1_alt | |
chr11_KI270903v1_alt | |
chr11_KI270927v1_alt | |
chr11_gl000202_random | |
chr12 | |
chr12_GL383549v1_alt | |
chr12_GL383550v2_alt | |
chr12_GL383551v1_alt | |
chr12_GL383552v1_alt | |
chr12_GL383553v2_alt | |
chr12_GL877875v1_alt | |
chr12_GL877876v1_alt | |
chr12_KI270833v1_alt | |
chr12_KI270834v1_alt | |
chr12_KI270835v1_alt | |
chr12_KI270836v1_alt | |
chr12_KI270837v1_alt | |
chr12_KI270904v1_alt | |
chr13 | |
chr13_KI270838v1_alt | |
chr13_KI270839v1_alt | |
chr13_KI270840v1_alt | |
chr13_KI270841v1_alt | |
chr13_KI270842v1_alt | |
chr13_KI270843v1_alt | |
chr14 | |
chr14_GL000009v2_random | |
chr14_GL000194v1_random | |
chr14_GL000225v1_random | |
chr14_KI270722v1_random | |
chr14_KI270723v1_random | |
chr14_KI270724v1_random | |
chr14_KI270725v1_random | |
chr14_KI270726v1_random | |
chr14_KI270844v1_alt | |
chr14_KI270845v1_alt | |
chr14_KI270846v1_alt | |
chr14_KI270847v1_alt | |
chr15 | |
chr15_GL383554v1_alt | |
chr15_GL383555v2_alt | |
chr15_KI270727v1_random | |
chr15_KI270848v1_alt | |
chr15_KI270849v1_alt | |
chr15_KI270850v1_alt | |
chr15_KI270851v1_alt | |
chr15_KI270852v1_alt | |
chr15_KI270905v1_alt | |
chr15_KI270906v1_alt | |
chr16 | |
chr16_GL383556v1_alt | |
chr16_GL383557v1_alt | |
chr16_KI270728v1_random | |
chr16_KI270853v1_alt | |
chr16_KI270854v1_alt | |
chr16_KI270855v1_alt | |
chr16_KI270856v1_alt | |
chr17 | |
chr17_GL000205v2_random | |
chr17_GL000258v2_alt | |
chr17_GL383563v3_alt | |
chr17_GL383564v2_alt | |
chr17_GL383565v1_alt | |
chr17_GL383566v1_alt | |
chr17_JH159146v1_alt | |
chr17_JH159147v1_alt | |
chr17_JH159148v1_alt | |
chr17_KI270729v1_random | |
chr17_KI270730v1_random | |
chr17_KI270857v1_alt | |
chr17_KI270858v1_alt | |
chr17_KI270859v1_alt | |
chr17_KI270860v1_alt | |
chr17_KI270861v1_alt | |
chr17_KI270862v1_alt | |
chr17_KI270907v1_alt | |
chr17_KI270908v1_alt | |
chr17_KI270909v1_alt | |
chr17_KI270910v1_alt | |
chr17_gl000203_random | |
chr17_gl000204_random | |
chr17_gl000205_random | |
chr18 | |
chr18_GL383567v1_alt | |
chr18_GL383568v1_alt | |
chr18_GL383569v1_alt | |
chr18_GL383570v1_alt | |
chr18_GL383571v1_alt | |
chr18_GL383572v1_alt | |
chr18_KI270863v1_alt | |
chr18_KI270864v1_alt | |
chr18_KI270911v1_alt | |
chr18_KI270912v1_alt | |
chr18_gl000207_random | |
chr19 | |
chr19_GL000209v2_alt | |
chr19_GL383573v1_alt | |
chr19_GL383574v1_alt | |
chr19_GL383575v2_alt | |
chr19_GL383576v1_alt | |
chr19_GL949746v1_alt | |
chr19_GL949747v2_alt | |
chr19_GL949748v2_alt | |
chr19_GL949749v2_alt | |
chr19_GL949750v2_alt | |
chr19_GL949751v2_alt | |
chr19_GL949752v1_alt | |
chr19_GL949753v2_alt | |
chr19_KI270865v1_alt | |
chr19_KI270866v1_alt | |
chr19_KI270867v1_alt | |
chr19_KI270868v1_alt | |
chr19_KI270882v1_alt | |
chr19_KI270883v1_alt | |
chr19_KI270884v1_alt | |
chr19_KI270885v1_alt | |
chr19_KI270886v1_alt | |
chr19_KI270887v1_alt | |
chr19_KI270888v1_alt | |
chr19_KI270889v1_alt | |
chr19_KI270890v1_alt | |
chr19_KI270891v1_alt | |
chr19_KI270914v1_alt | |
chr19_KI270915v1_alt | |
chr19_KI270916v1_alt | |
chr19_KI270917v1_alt | |
chr19_KI270918v1_alt | |
chr19_KI270919v1_alt | |
chr19_KI270920v1_alt | |
chr19_KI270921v1_alt | |
chr19_KI270922v1_alt | |
chr19_KI270923v1_alt | |
chr19_KI270929v1_alt | |
chr19_KI270930v1_alt | |
chr19_KI270931v1_alt | |
chr19_KI270932v1_alt | |
chr19_KI270933v1_alt | |
chr19_KI270938v1_alt | |
chr19_gl000208_random | |
chr19_gl000209_random | |
chr1_GL383518v1_alt | |
chr1_GL383519v1_alt | |
chr1_GL383520v2_alt | |
chr1_KI270706v1_random | |
chr1_KI270707v1_random | |
chr1_KI270708v1_random | |
chr1_KI270709v1_random | |
chr1_KI270710v1_random | |
chr1_KI270711v1_random | |
chr1_KI270712v1_random | |
chr1_KI270713v1_random | |
chr1_KI270714v1_random | |
chr1_KI270759v1_alt | |
chr1_KI270760v1_alt | |
chr1_KI270761v1_alt | |
chr1_KI270762v1_alt | |
chr1_KI270763v1_alt | |
chr1_KI270764v1_alt | |
chr1_KI270765v1_alt | |
chr1_KI270766v1_alt | |
chr1_KI270892v1_alt | |
chr1_gl000191_random | |
chr1_gl000192_random | |
chr2 | |
chr20 | |
chr20_GL383577v2_alt | |
chr20_KI270869v1_alt | |
chr20_KI270870v1_alt | |
chr20_KI270871v1_alt | |
chr21 | |
chr21_GL383578v2_alt | |
chr21_GL383579v2_alt | |
chr21_GL383580v2_alt | |
chr21_GL383581v2_alt | |
chr21_KI270872v1_alt | |
chr21_KI270873v1_alt | |
chr21_KI270874v1_alt | |
chr22 | |
chr22_GL383582v2_alt | |
chr22_GL383583v2_alt | |
chr22_KB663609v1_alt | |
chr22_KI270731v1_random | |
chr22_KI270732v1_random | |
chr22_KI270733v1_random | |
chr22_KI270734v1_random | |
chr22_KI270735v1_random | |
chr22_KI270736v1_random | |
chr22_KI270737v1_random | |
chr22_KI270738v1_random | |
chr22_KI270739v1_random | |
chr22_KI270875v1_alt | |
chr22_KI270876v1_alt | |
chr22_KI270877v1_alt | |
chr22_KI270878v1_alt | |
chr22_KI270879v1_alt | |
chr22_KI270928v1_alt | |
chr2_GL383521v1_alt | |
chr2_GL383522v1_alt | |
chr2_GL582966v2_alt | |
chr2_KI270715v1_random | |
chr2_KI270716v1_random | |
chr2_KI270767v1_alt | |
chr2_KI270768v1_alt | |
chr2_KI270769v1_alt | |
chr2_KI270770v1_alt | |
chr2_KI270771v1_alt | |
chr2_KI270772v1_alt | |
chr2_KI270773v1_alt | |
chr2_KI270774v1_alt | |
chr2_KI270775v1_alt | |
chr2_KI270776v1_alt | |
chr2_KI270893v1_alt | |
chr2_KI270894v1_alt | |
chr3 | |
chr3_GL000221v1_random | |
chr3_GL383526v1_alt | |
chr3_JH636055v2_alt | |
chr3_KI270777v1_alt | |
chr3_KI270778v1_alt | |
chr3_KI270779v1_alt | |
chr3_KI270780v1_alt | |
chr3_KI270781v1_alt | |
chr3_KI270782v1_alt | |
chr3_KI270783v1_alt | |
chr3_KI270784v1_alt | |
chr3_KI270895v1_alt | |
chr3_KI270924v1_alt | |
chr3_KI270934v1_alt | |
chr3_KI270935v1_alt | |
chr3_KI270936v1_alt | |
chr3_KI270937v1_alt | |
chr4 | |
chr4_GL000008v2_random | |
chr4_GL000257v2_alt | |
chr4_GL383527v1_alt | |
chr4_GL383528v1_alt | |
chr4_KI270785v1_alt | |
chr4_KI270786v1_alt | |
chr4_KI270787v1_alt | |
chr4_KI270788v1_alt | |
chr4_KI270789v1_alt | |
chr4_KI270790v1_alt | |
chr4_KI270896v1_alt | |
chr4_KI270925v1_alt | |
chr4_gl000193_random | |
chr4_gl000194_random | |
chr5 | |
chr5_GL000208v1_random | |
chr5_GL339449v2_alt | |
chr5_GL383530v1_alt | |
chr5_GL383531v1_alt | |
chr5_GL383532v1_alt | |
chr5_GL949742v1_alt | |
chr5_KI270791v1_alt | |
chr5_KI270792v1_alt | |
chr5_KI270793v1_alt | |
chr5_KI270794v1_alt | |
chr5_KI270795v1_alt | |
chr5_KI270796v1_alt | |
chr5_KI270897v1_alt | |
chr5_KI270898v1_alt | |
chr6 | |
chr6_GL000250v2_alt | |
chr6_GL000251v2_alt | |
chr6_GL000252v2_alt | |
chr6_GL000253v2_alt | |
chr6_GL000254v2_alt | |
chr6_GL000255v2_alt | |
chr6_GL000256v2_alt | |
chr6_GL383533v1_alt | |
chr6_KB021644v2_alt | |
chr6_KI270758v1_alt | |
chr6_KI270797v1_alt | |
chr6_KI270798v1_alt | |
chr6_KI270799v1_alt | |
chr6_KI270800v1_alt | |
chr6_KI270801v1_alt | |
chr6_KI270802v1_alt | |
chr7 | |
chr7_GL383534v2_alt | |
chr7_KI270803v1_alt | |
chr7_KI270804v1_alt | |
chr7_KI270805v1_alt | |
chr7_KI270806v1_alt | |
chr7_KI270807v1_alt | |
chr7_KI270808v1_alt | |
chr7_KI270809v1_alt | |
chr7_KI270899v1_alt | |
chr7_gl000195_random | |
chr8 | |
chr8_KI270810v1_alt | |
chr8_KI270811v1_alt | |
chr8_KI270812v1_alt | |
chr8_KI270813v1_alt | |
chr8_KI270814v1_alt | |
chr8_KI270815v1_alt | |
chr8_KI270816v1_alt | |
chr8_KI270817v1_alt | |
chr8_KI270818v1_alt | |
chr8_KI270819v1_alt | |
chr8_KI270820v1_alt | |
chr8_KI270821v1_alt | |
chr8_KI270822v1_alt | |
chr8_KI270900v1_alt | |
chr8_KI270901v1_alt | |
chr8_KI270926v1_alt | |
chr8_gl000196_random | |
chr9 | |
chr9_GL383539v1_alt | |
chr9_GL383540v1_alt | |
chr9_GL383541v1_alt | |
chr9_GL383542v1_alt | |
chr9_KI270717v1_random | |
chr9_KI270718v1_random | |
chr9_KI270719v1_random | |
chr9_KI270720v1_random | |
chr9_KI270823v1_alt | |
chr9_gl000198_random | |
chr9_gl000199_random | |
chr9_gl000200_random | |
chrM | |
chrUn_GL000195v1 | |
chrUn_GL000213v1 | |
chrUn_GL000214v1 | |
chrUn_GL000216v2 | |
chrUn_GL000218v1 | |
chrUn_GL000219v1 | |
chrUn_GL000220v1 | |
chrUn_GL000224v1 | |
chrUn_GL000226v1 | |
chrUn_KI270302v1 | |
chrUn_KI270303v1 | |
chrUn_KI270304v1 | |
chrUn_KI270305v1 | |
chrUn_KI270310v1 | |
chrUn_KI270311v1 | |
chrUn_KI270315v1 | |
chrUn_KI270317v1 | |
chrUn_KI270320v1 | |
chrUn_KI270322v1 | |
chrUn_KI270330v1 | |
chrUn_KI270334v1 | |
chrUn_KI270335v1 | |
chrUn_KI270338v1 | |
chrUn_KI270340v1 | |
chrUn_KI270362v1 | |
chrUn_KI270363v1 | |
chrUn_KI270364v1 | |
chrUn_KI270366v1 | |
chrUn_KI270371v1 | |
chrUn_KI270372v1 | |
chrUn_KI270373v1 | |
chrUn_KI270374v1 | |
chrUn_KI270375v1 | |
chrUn_KI270376v1 | |
chrUn_KI270378v1 | |
chrUn_KI270379v1 | |
chrUn_KI270381v1 | |
chrUn_KI270382v1 | |
chrUn_KI270383v1 | |
chrUn_KI270384v1 | |
chrUn_KI270385v1 | |
chrUn_KI270386v1 | |
chrUn_KI270387v1 | |
chrUn_KI270388v1 | |
chrUn_KI270389v1 | |
chrUn_KI270390v1 | |
chrUn_KI270391v1 | |
chrUn_KI270392v1 | |
chrUn_KI270393v1 | |
chrUn_KI270394v1 | |
chrUn_KI270395v1 | |
chrUn_KI270396v1 | |
chrUn_KI270411v1 | |
chrUn_KI270418v1 | |
chrUn_KI270420v1 | |
chrUn_KI270422v1 | |
chrUn_KI270424v1 | |
chrUn_KI270425v1 | |
chrUn_KI270435v1 | |
chrUn_KI270438v1 | |
chrUn_KI270442v1 | |
chrUn_KI270448v1 | |
chrUn_KI270507v1 | |
chrUn_KI270508v1 | |
chrUn_KI270511v1 | |
chrUn_KI270512v1 | |
chrUn_KI270519v1 | |
chrUn_KI270521v1 | |
chrUn_KI270538v1 | |
chrUn_KI270539v1 | |
chrUn_KI270579v1 | |
chrUn_KI270580v1 | |
chrUn_KI270581v1 | |
chrUn_KI270582v1 | |
chrUn_KI270583v1 | |
chrUn_KI270589v1 | |
chrUn_KI270741v1 | |
chrUn_KI270742v1 | |
chrUn_KI270743v1 | |
chrUn_KI270744v1 | |
chrUn_KI270745v1 | |
chrUn_KI270746v1 | |
chrUn_KI270747v1 | |
chrUn_KI270748v1 | |
chrUn_KI270749v1 | |
chrUn_KI270750v1 | |
chrUn_KI270751v1 | |
chrUn_KI270753v1 | |
chrUn_KI270754v1 | |
chrUn_KI270755v1 | |
chrUn_KI270756v1 | |
chrUn_KI270757v1 | |
chrUn_gl000211 | |
chrUn_gl000212 | |
chrUn_gl000213 | |
chrUn_gl000214 | |
chrUn_gl000215 | |
chrUn_gl000216 | |
chrUn_gl000217 | |
chrUn_gl000218 | |
chrUn_gl000219 | |
chrUn_gl000220 | |
chrUn_gl000221 | |
chrUn_gl000222 | |
chrUn_gl000224 | |
chrUn_gl000225 | |
chrUn_gl000226 | |
chrUn_gl000228 | |
chrUn_gl000229 | |
chrUn_gl000230 | |
chrUn_gl000231 | |
chrUn_gl000232 | |
chrUn_gl000233 | |
chrUn_gl000234 | |
chrUn_gl000235 | |
chrUn_gl000236 | |
chrUn_gl000237 | |
chrUn_gl000239 | |
chrUn_gl000240 | |
chrUn_gl000241 | |
chrUn_gl000243 | |
chrUn_gl000244 | |
chrUn_gl000245 | |
chrUn_gl000246 | |
chrUn_gl000247 | |
chrX | |
chrX_KI270880v1_alt | |
chrX_KI270881v1_alt | |
chrX_KI270913v1_alt | |
chrY | |
chrY_KI270740v1_random |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
chr1 | |
chr10 | |
chr11 | |
chr11_gl000202_random | |
chr12 | |
chr13 | |
chr14 | |
chr15 | |
chr16 | |
chr17 | |
chr17_ctg5_hap1 | |
chr17_gl000203_random | |
chr17_gl000204_random | |
chr17_gl000205_random | |
chr17_gl000206_random | |
chr18 | |
chr18_gl000207_random | |
chr19 | |
chr19_gl000208_random | |
chr19_gl000209_random | |
chr1_gl000191_random | |
chr1_gl000192_random | |
chr2 | |
chr20 | |
chr21 | |
chr21_gl000210_random | |
chr22 | |
chr3 | |
chr4 | |
chr4_ctg9_hap1 | |
chr4_gl000193_random | |
chr4_gl000194_random | |
chr5 | |
chr6 | |
chr6_apd_hap1 | |
chr6_cox_hap2 | |
chr6_dbb_hap3 | |
chr6_mann_hap4 | |
chr6_mcf_hap5 | |
chr6_qbl_hap6 | |
chr6_ssto_hap7 | |
chr7 | |
chr7_gl000195_random | |
chr8 | |
chr8_gl000196_random | |
chr8_gl000197_random | |
chr9 | |
chr9_gl000198_random | |
chr9_gl000199_random | |
chr9_gl000200_random | |
chr9_gl000201_random | |
chrM | |
chrUn_gl000211 | |
chrUn_gl000212 | |
chrUn_gl000213 | |
chrUn_gl000214 | |
chrUn_gl000215 | |
chrUn_gl000216 | |
chrUn_gl000217 | |
chrUn_gl000218 | |
chrUn_gl000219 | |
chrUn_gl000220 | |
chrUn_gl000221 | |
chrUn_gl000222 | |
chrUn_gl000223 | |
chrUn_gl000224 | |
chrUn_gl000225 | |
chrUn_gl000226 | |
chrUn_gl000227 | |
chrUn_gl000228 | |
chrUn_gl000229 | |
chrUn_gl000230 | |
chrUn_gl000231 | |
chrUn_gl000232 | |
chrUn_gl000233 | |
chrUn_gl000234 | |
chrUn_gl000235 | |
chrUn_gl000236 | |
chrUn_gl000237 | |
chrUn_gl000238 | |
chrUn_gl000239 | |
chrUn_gl000240 | |
chrUn_gl000241 | |
chrUn_gl000242 | |
chrUn_gl000243 | |
chrUn_gl000244 | |
chrUn_gl000245 | |
chrUn_gl000246 | |
chrUn_gl000247 | |
chrUn_gl000248 | |
chrUn_gl000249 | |
chrX | |
chrY |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
@HD VN:1.6 | |
@SQ SN:chr1 LN:249250621 M5:1b22b98cdeb4a9304cb5d48026a85128 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr2 LN:243199373 M5:a0d9851da00400dec1098a9255ac712e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr3 LN:198022430 M5:641e4338fa8d52a5b781bd2a2c08d3c3 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr4 LN:191154276 M5:23dccd106897542ad87d2765d28a19a1 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr5 LN:180915260 M5:0740173db9ffd264d728f32784845cd7 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr6 LN:171115067 M5:1d3a93a248d92a729ee764823acbbc6b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr7 LN:159138663 M5:618366e953d6aaad97dbe4777c29375e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrX LN:155270560 M5:7e0e2e580297b7764e31dbc80c2540dd UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr8 LN:146364022 M5:96f514a9929e410c6651697bded59aec UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr9 LN:141213431 M5:3e273117f15e0a400f01055d9f393768 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr10 LN:135534747 M5:988c28e000e84c26d552359af1ea2e1d UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr11 LN:135006516 M5:98c59049a2df285c76ffb1c6db8f8b96 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr12 LN:133851895 M5:51851ac0e1a115847ad36449b0015864 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr13 LN:115169878 M5:283f8d7892baa81b510a015719ca7b0b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr14 LN:107349540 M5:98f3cae32b2a2e9524bc19813927542e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr15 LN:102531392 M5:e5645a794a8238215b2cd77acb95a078 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr16 LN:90354753 M5:fc9b1a7b42b97a864f56b348b06095e6 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr17 LN:81195210 M5:351f64d4f4f9ddd45b35336ad97aa6de UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr18 LN:78077248 M5:b15d4b2d29dde9d3e4f93d1d0f2cbc9c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr20 LN:63025520 M5:0dec9660ec1efaaf33281c0d5ea2560f UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrY LN:59373566 M5:1e86411d73e6f00a10590f976be01623 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr19 LN:59128983 M5:1aacd71f30db8e561810913e0b72636d UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr22 LN:51304566 M5:a718acaa6135fdca8357d5bfe94211dd UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr21 LN:48129895 M5:2979a6085bfe28e3ad6f552f361ed74d UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr6_ssto_hap7 LN:4928567 M5:3b6d666200e72bcc036bf88a4d7e0749 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr6_mcf_hap5 LN:4833398 M5:efed415dd8742349cb7aaca054675b9a UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr6_cox_hap2 LN:4795371 M5:18c17e1641ef04873b15f40f6c8659a4 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr6_mann_hap4 LN:4683263 M5:9d51d4152174461cd6715c7ddc588dc8 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr6_apd_hap1 LN:4622290 M5:fe71bc63420d666884f37a3ad79f3317 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr6_qbl_hap6 LN:4611984 M5:094d037050cad692b57ea12c4fef790f UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr6_dbb_hap3 LN:4610396 M5:2a3c677c426a10e137883ae1ffb8da3f UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr17_ctg5_hap1 LN:1680828 M5:d89517b400226d3b56e753972a7cad67 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr4_ctg9_hap1 LN:590426 M5:fa24f81b680df26bcfb6d69b784fbe36 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr1_gl000192_random LN:547496 M5:325ba9e808f669dfeee210fdd7b470ac UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000225 LN:211173 M5:63945c3e6962f28ffd469719a747e73c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr4_gl000194_random LN:191469 M5:6ac8f815bf8e845bb3031b73f812c012 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr4_gl000193_random LN:189789 M5:dbb6e8ece0b5de29da56601613007c2a UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr9_gl000200_random LN:187035 M5:75e4c8d17cd4addf3917d1703cacaf25 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000222 LN:186861 M5:6fe9abac455169f50470f5a6b01d0f59 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000212 LN:186858 M5:563531689f3dbd691331fd6c5730a88b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr7_gl000195_random LN:182896 M5:5d9ec007868d517e73543b005ba48535 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000223 LN:180455 M5:399dfa03bf32022ab52a846f7ca35b30 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000224 LN:179693 M5:d5b2fc04f6b41b212a4198a07f450e20 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000219 LN:179198 M5:f977edd13bac459cb2ed4a5457dba1b3 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr17_gl000205_random LN:174588 M5:d22441398d99caf673e9afb9a1908ec5 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000215 LN:172545 M5:5eb3b418480ae67a997957c909375a73 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000216 LN:172294 M5:642a232d91c486ac339263820aef7fe0 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000217 LN:172149 M5:6d243e18dea1945fb7f2517615b8f52e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr9_gl000199_random LN:169874 M5:569af3b73522fab4b40995ae4944e78e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000211 LN:166566 M5:7daaa45c66b288847b9b32b964e623d3 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000213 LN:164239 M5:9d424fdcc98866650b58f004080a992a UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000220 LN:161802 M5:fc35de963c57bf7648429e6454f1c9db UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000218 LN:161147 M5:1d708b54644c26c7e01c2dad5426d38c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr19_gl000209_random LN:159169 M5:f40598e2a5a6b26e84a3775e0d1e2c81 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000221 LN:155397 M5:3238fb74ea87ae857f9c7508d315babb UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000214 LN:137718 M5:46c2032c37f2ed899eb41c0473319a69 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000228 LN:129120 M5:c5a17c97e2c1a0b6a9cc5a6b064b714f UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000227 LN:128374 M5:a4aead23f8053f2655e468bcc6ecdceb UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr1_gl000191_random LN:106433 M5:d75b436f50a8214ee9c2a51d30b2c2cc UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr19_gl000208_random LN:92689 M5:aa81be49bf3fe63a79bdc6a6f279abf6 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr9_gl000198_random LN:90085 M5:868e7784040da90d900d2d1b667a1383 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr17_gl000204_random LN:81310 M5:efc49c871536fa8d79cb0a06fa739722 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000233 LN:45941 M5:7fed60298a8d62ff808b74b6ce820001 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000237 LN:45867 M5:e0c82e7751df73f4f6d0ed30cdc853c0 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000230 LN:43691 M5:b4eb71ee878d3706246b7c1dbef69299 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000242 LN:43523 M5:2f8694fc47576bc81b5fe9e7de0ba49e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000243 LN:43341 M5:cc34279a7e353136741c9fce79bc4396 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000241 LN:42152 M5:ef4258cdc5a45c206cea8fc3e1d858cf UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000236 LN:41934 M5:fdcd739913efa1fdc64b6c0cd7016779 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000240 LN:41933 M5:445a86173da9f237d7bcf41c6cb8cc62 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr17_gl000206_random LN:41001 M5:43f69e423533e948bfae5ce1d45bd3f1 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000232 LN:40652 M5:3e06b6741061ad93a8587531307057d8 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000234 LN:40531 M5:93f998536b61a56fd0ff47322a911d4b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr11_gl000202_random LN:40103 M5:06cbf126247d89664a4faebad130fe9c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000238 LN:39939 M5:131b1efc3270cc838686b54e7c34b17b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000244 LN:39929 M5:0996b4475f353ca98bacb756ac479140 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000248 LN:39786 M5:5a8e43bec9be36c7b49c84d585107776 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr8_gl000196_random LN:38914 M5:d92206d1bb4c3b4019c43c0875c06dc0 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000249 LN:38502 M5:1d78abec37c15fe29a275eb08d5af236 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000246 LN:38154 M5:e4afcd31912af9d9c2546acf1cb23af2 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr17_gl000203_random LN:37498 M5:96358c325fe0e70bee73436e8bb14dbd UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr8_gl000197_random LN:37175 M5:6f5efdd36643a9b8c8ccad6f2f1edc7b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000245 LN:36651 M5:89bc61960f37d94abf0df2d481ada0ec UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000247 LN:36422 M5:7de00226bb7df1c57276ca6baabafd15 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr9_gl000201_random LN:36148 M5:dfb7e7ec60ffdcb85cb359ea28454ee9 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000235 LN:34474 M5:118a25ca210cfbcdfb6c2ebb249f9680 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000239 LN:33824 M5:99795f15702caec4fa1c4e15f8a29c07 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr21_gl000210_random LN:27682 M5:851106a74238044126131ce2a8e5847c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000231 LN:27386 M5:ba8882ce3a1efa2080e5d29b956568a4 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000229 LN:19913 M5:d0f40ec87de311d8e715b52e4c7062e1 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrM LN:16571 M5:d2ed829b8a1628d16cbeee88e88e39eb UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chrUn_gl000226 LN:15008 M5:1c1b2cd1fccbc0a99b6a447fa24d1504 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa | |
@SQ SN:chr18_gl000207_random LN:4262 M5:f3814841f1939d3ca19072d9e89f3fd7 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment