Skip to content

Instantly share code, notes, and snippets.

Embed
What would you like to do?
GATK liftover ticket
chr1
chr10
chr10_GL383545v1_alt
chr10_GL383546v1_alt
chr10_KI270824v1_alt
chr10_KI270825v1_alt
chr11
chr11_GL383547v1_alt
chr11_JH159136v1_alt
chr11_JH159137v1_alt
chr11_KI270721v1_random
chr11_KI270826v1_alt
chr11_KI270827v1_alt
chr11_KI270829v1_alt
chr11_KI270830v1_alt
chr11_KI270831v1_alt
chr11_KI270832v1_alt
chr11_KI270902v1_alt
chr11_KI270903v1_alt
chr11_KI270927v1_alt
chr11_gl000202_random
chr12
chr12_GL383549v1_alt
chr12_GL383550v2_alt
chr12_GL383551v1_alt
chr12_GL383552v1_alt
chr12_GL383553v2_alt
chr12_GL877875v1_alt
chr12_GL877876v1_alt
chr12_KI270833v1_alt
chr12_KI270834v1_alt
chr12_KI270835v1_alt
chr12_KI270836v1_alt
chr12_KI270837v1_alt
chr12_KI270904v1_alt
chr13
chr13_KI270838v1_alt
chr13_KI270839v1_alt
chr13_KI270840v1_alt
chr13_KI270841v1_alt
chr13_KI270842v1_alt
chr13_KI270843v1_alt
chr14
chr14_GL000009v2_random
chr14_GL000194v1_random
chr14_GL000225v1_random
chr14_KI270722v1_random
chr14_KI270723v1_random
chr14_KI270724v1_random
chr14_KI270725v1_random
chr14_KI270726v1_random
chr14_KI270844v1_alt
chr14_KI270845v1_alt
chr14_KI270846v1_alt
chr14_KI270847v1_alt
chr15
chr15_GL383554v1_alt
chr15_GL383555v2_alt
chr15_KI270727v1_random
chr15_KI270848v1_alt
chr15_KI270849v1_alt
chr15_KI270850v1_alt
chr15_KI270851v1_alt
chr15_KI270852v1_alt
chr15_KI270905v1_alt
chr15_KI270906v1_alt
chr16
chr16_GL383556v1_alt
chr16_GL383557v1_alt
chr16_KI270728v1_random
chr16_KI270853v1_alt
chr16_KI270854v1_alt
chr16_KI270855v1_alt
chr16_KI270856v1_alt
chr17
chr17_GL000205v2_random
chr17_GL000258v2_alt
chr17_GL383563v3_alt
chr17_GL383564v2_alt
chr17_GL383565v1_alt
chr17_GL383566v1_alt
chr17_JH159146v1_alt
chr17_JH159147v1_alt
chr17_JH159148v1_alt
chr17_KI270729v1_random
chr17_KI270730v1_random
chr17_KI270857v1_alt
chr17_KI270858v1_alt
chr17_KI270859v1_alt
chr17_KI270860v1_alt
chr17_KI270861v1_alt
chr17_KI270862v1_alt
chr17_KI270907v1_alt
chr17_KI270908v1_alt
chr17_KI270909v1_alt
chr17_KI270910v1_alt
chr17_gl000203_random
chr17_gl000204_random
chr17_gl000205_random
chr18
chr18_GL383567v1_alt
chr18_GL383568v1_alt
chr18_GL383569v1_alt
chr18_GL383570v1_alt
chr18_GL383571v1_alt
chr18_GL383572v1_alt
chr18_KI270863v1_alt
chr18_KI270864v1_alt
chr18_KI270911v1_alt
chr18_KI270912v1_alt
chr18_gl000207_random
chr19
chr19_GL000209v2_alt
chr19_GL383573v1_alt
chr19_GL383574v1_alt
chr19_GL383575v2_alt
chr19_GL383576v1_alt
chr19_GL949746v1_alt
chr19_GL949747v2_alt
chr19_GL949748v2_alt
chr19_GL949749v2_alt
chr19_GL949750v2_alt
chr19_GL949751v2_alt
chr19_GL949752v1_alt
chr19_GL949753v2_alt
chr19_KI270865v1_alt
chr19_KI270866v1_alt
chr19_KI270867v1_alt
chr19_KI270868v1_alt
chr19_KI270882v1_alt
chr19_KI270883v1_alt
chr19_KI270884v1_alt
chr19_KI270885v1_alt
chr19_KI270886v1_alt
chr19_KI270887v1_alt
chr19_KI270888v1_alt
chr19_KI270889v1_alt
chr19_KI270890v1_alt
chr19_KI270891v1_alt
chr19_KI270914v1_alt
chr19_KI270915v1_alt
chr19_KI270916v1_alt
chr19_KI270917v1_alt
chr19_KI270918v1_alt
chr19_KI270919v1_alt
chr19_KI270920v1_alt
chr19_KI270921v1_alt
chr19_KI270922v1_alt
chr19_KI270923v1_alt
chr19_KI270929v1_alt
chr19_KI270930v1_alt
chr19_KI270931v1_alt
chr19_KI270932v1_alt
chr19_KI270933v1_alt
chr19_KI270938v1_alt
chr19_gl000208_random
chr19_gl000209_random
chr1_GL383518v1_alt
chr1_GL383519v1_alt
chr1_GL383520v2_alt
chr1_KI270706v1_random
chr1_KI270707v1_random
chr1_KI270708v1_random
chr1_KI270709v1_random
chr1_KI270710v1_random
chr1_KI270711v1_random
chr1_KI270712v1_random
chr1_KI270713v1_random
chr1_KI270714v1_random
chr1_KI270759v1_alt
chr1_KI270760v1_alt
chr1_KI270761v1_alt
chr1_KI270762v1_alt
chr1_KI270763v1_alt
chr1_KI270764v1_alt
chr1_KI270765v1_alt
chr1_KI270766v1_alt
chr1_KI270892v1_alt
chr1_gl000191_random
chr1_gl000192_random
chr2
chr20
chr20_GL383577v2_alt
chr20_KI270869v1_alt
chr20_KI270870v1_alt
chr20_KI270871v1_alt
chr21
chr21_GL383578v2_alt
chr21_GL383579v2_alt
chr21_GL383580v2_alt
chr21_GL383581v2_alt
chr21_KI270872v1_alt
chr21_KI270873v1_alt
chr21_KI270874v1_alt
chr22
chr22_GL383582v2_alt
chr22_GL383583v2_alt
chr22_KB663609v1_alt
chr22_KI270731v1_random
chr22_KI270732v1_random
chr22_KI270733v1_random
chr22_KI270734v1_random
chr22_KI270735v1_random
chr22_KI270736v1_random
chr22_KI270737v1_random
chr22_KI270738v1_random
chr22_KI270739v1_random
chr22_KI270875v1_alt
chr22_KI270876v1_alt
chr22_KI270877v1_alt
chr22_KI270878v1_alt
chr22_KI270879v1_alt
chr22_KI270928v1_alt
chr2_GL383521v1_alt
chr2_GL383522v1_alt
chr2_GL582966v2_alt
chr2_KI270715v1_random
chr2_KI270716v1_random
chr2_KI270767v1_alt
chr2_KI270768v1_alt
chr2_KI270769v1_alt
chr2_KI270770v1_alt
chr2_KI270771v1_alt
chr2_KI270772v1_alt
chr2_KI270773v1_alt
chr2_KI270774v1_alt
chr2_KI270775v1_alt
chr2_KI270776v1_alt
chr2_KI270893v1_alt
chr2_KI270894v1_alt
chr3
chr3_GL000221v1_random
chr3_GL383526v1_alt
chr3_JH636055v2_alt
chr3_KI270777v1_alt
chr3_KI270778v1_alt
chr3_KI270779v1_alt
chr3_KI270780v1_alt
chr3_KI270781v1_alt
chr3_KI270782v1_alt
chr3_KI270783v1_alt
chr3_KI270784v1_alt
chr3_KI270895v1_alt
chr3_KI270924v1_alt
chr3_KI270934v1_alt
chr3_KI270935v1_alt
chr3_KI270936v1_alt
chr3_KI270937v1_alt
chr4
chr4_GL000008v2_random
chr4_GL000257v2_alt
chr4_GL383527v1_alt
chr4_GL383528v1_alt
chr4_KI270785v1_alt
chr4_KI270786v1_alt
chr4_KI270787v1_alt
chr4_KI270788v1_alt
chr4_KI270789v1_alt
chr4_KI270790v1_alt
chr4_KI270896v1_alt
chr4_KI270925v1_alt
chr4_gl000193_random
chr4_gl000194_random
chr5
chr5_GL000208v1_random
chr5_GL339449v2_alt
chr5_GL383530v1_alt
chr5_GL383531v1_alt
chr5_GL383532v1_alt
chr5_GL949742v1_alt
chr5_KI270791v1_alt
chr5_KI270792v1_alt
chr5_KI270793v1_alt
chr5_KI270794v1_alt
chr5_KI270795v1_alt
chr5_KI270796v1_alt
chr5_KI270897v1_alt
chr5_KI270898v1_alt
chr6
chr6_GL000250v2_alt
chr6_GL000251v2_alt
chr6_GL000252v2_alt
chr6_GL000253v2_alt
chr6_GL000254v2_alt
chr6_GL000255v2_alt
chr6_GL000256v2_alt
chr6_GL383533v1_alt
chr6_KB021644v2_alt
chr6_KI270758v1_alt
chr6_KI270797v1_alt
chr6_KI270798v1_alt
chr6_KI270799v1_alt
chr6_KI270800v1_alt
chr6_KI270801v1_alt
chr6_KI270802v1_alt
chr7
chr7_GL383534v2_alt
chr7_KI270803v1_alt
chr7_KI270804v1_alt
chr7_KI270805v1_alt
chr7_KI270806v1_alt
chr7_KI270807v1_alt
chr7_KI270808v1_alt
chr7_KI270809v1_alt
chr7_KI270899v1_alt
chr7_gl000195_random
chr8
chr8_KI270810v1_alt
chr8_KI270811v1_alt
chr8_KI270812v1_alt
chr8_KI270813v1_alt
chr8_KI270814v1_alt
chr8_KI270815v1_alt
chr8_KI270816v1_alt
chr8_KI270817v1_alt
chr8_KI270818v1_alt
chr8_KI270819v1_alt
chr8_KI270820v1_alt
chr8_KI270821v1_alt
chr8_KI270822v1_alt
chr8_KI270900v1_alt
chr8_KI270901v1_alt
chr8_KI270926v1_alt
chr8_gl000196_random
chr9
chr9_GL383539v1_alt
chr9_GL383540v1_alt
chr9_GL383541v1_alt
chr9_GL383542v1_alt
chr9_KI270717v1_random
chr9_KI270718v1_random
chr9_KI270719v1_random
chr9_KI270720v1_random
chr9_KI270823v1_alt
chr9_gl000198_random
chr9_gl000199_random
chr9_gl000200_random
chrM
chrUn_GL000195v1
chrUn_GL000213v1
chrUn_GL000214v1
chrUn_GL000216v2
chrUn_GL000218v1
chrUn_GL000219v1
chrUn_GL000220v1
chrUn_GL000224v1
chrUn_GL000226v1
chrUn_KI270302v1
chrUn_KI270303v1
chrUn_KI270304v1
chrUn_KI270305v1
chrUn_KI270310v1
chrUn_KI270311v1
chrUn_KI270315v1
chrUn_KI270317v1
chrUn_KI270320v1
chrUn_KI270322v1
chrUn_KI270330v1
chrUn_KI270334v1
chrUn_KI270335v1
chrUn_KI270338v1
chrUn_KI270340v1
chrUn_KI270362v1
chrUn_KI270363v1
chrUn_KI270364v1
chrUn_KI270366v1
chrUn_KI270371v1
chrUn_KI270372v1
chrUn_KI270373v1
chrUn_KI270374v1
chrUn_KI270375v1
chrUn_KI270376v1
chrUn_KI270378v1
chrUn_KI270379v1
chrUn_KI270381v1
chrUn_KI270382v1
chrUn_KI270383v1
chrUn_KI270384v1
chrUn_KI270385v1
chrUn_KI270386v1
chrUn_KI270387v1
chrUn_KI270388v1
chrUn_KI270389v1
chrUn_KI270390v1
chrUn_KI270391v1
chrUn_KI270392v1
chrUn_KI270393v1
chrUn_KI270394v1
chrUn_KI270395v1
chrUn_KI270396v1
chrUn_KI270411v1
chrUn_KI270418v1
chrUn_KI270420v1
chrUn_KI270422v1
chrUn_KI270424v1
chrUn_KI270425v1
chrUn_KI270435v1
chrUn_KI270438v1
chrUn_KI270442v1
chrUn_KI270448v1
chrUn_KI270507v1
chrUn_KI270508v1
chrUn_KI270511v1
chrUn_KI270512v1
chrUn_KI270519v1
chrUn_KI270521v1
chrUn_KI270538v1
chrUn_KI270539v1
chrUn_KI270579v1
chrUn_KI270580v1
chrUn_KI270581v1
chrUn_KI270582v1
chrUn_KI270583v1
chrUn_KI270589v1
chrUn_KI270741v1
chrUn_KI270742v1
chrUn_KI270743v1
chrUn_KI270744v1
chrUn_KI270745v1
chrUn_KI270746v1
chrUn_KI270747v1
chrUn_KI270748v1
chrUn_KI270749v1
chrUn_KI270750v1
chrUn_KI270751v1
chrUn_KI270753v1
chrUn_KI270754v1
chrUn_KI270755v1
chrUn_KI270756v1
chrUn_KI270757v1
chrUn_gl000211
chrUn_gl000212
chrUn_gl000213
chrUn_gl000214
chrUn_gl000215
chrUn_gl000216
chrUn_gl000217
chrUn_gl000218
chrUn_gl000219
chrUn_gl000220
chrUn_gl000221
chrUn_gl000222
chrUn_gl000224
chrUn_gl000225
chrUn_gl000226
chrUn_gl000228
chrUn_gl000229
chrUn_gl000230
chrUn_gl000231
chrUn_gl000232
chrUn_gl000233
chrUn_gl000234
chrUn_gl000235
chrUn_gl000236
chrUn_gl000237
chrUn_gl000239
chrUn_gl000240
chrUn_gl000241
chrUn_gl000243
chrUn_gl000244
chrUn_gl000245
chrUn_gl000246
chrUn_gl000247
chrX
chrX_KI270880v1_alt
chrX_KI270881v1_alt
chrX_KI270913v1_alt
chrY
chrY_KI270740v1_random
chr1
chr10
chr11
chr11_gl000202_random
chr12
chr13
chr14
chr15
chr16
chr17
chr17_ctg5_hap1
chr17_gl000203_random
chr17_gl000204_random
chr17_gl000205_random
chr17_gl000206_random
chr18
chr18_gl000207_random
chr19
chr19_gl000208_random
chr19_gl000209_random
chr1_gl000191_random
chr1_gl000192_random
chr2
chr20
chr21
chr21_gl000210_random
chr22
chr3
chr4
chr4_ctg9_hap1
chr4_gl000193_random
chr4_gl000194_random
chr5
chr6
chr6_apd_hap1
chr6_cox_hap2
chr6_dbb_hap3
chr6_mann_hap4
chr6_mcf_hap5
chr6_qbl_hap6
chr6_ssto_hap7
chr7
chr7_gl000195_random
chr8
chr8_gl000196_random
chr8_gl000197_random
chr9
chr9_gl000198_random
chr9_gl000199_random
chr9_gl000200_random
chr9_gl000201_random
chrM
chrUn_gl000211
chrUn_gl000212
chrUn_gl000213
chrUn_gl000214
chrUn_gl000215
chrUn_gl000216
chrUn_gl000217
chrUn_gl000218
chrUn_gl000219
chrUn_gl000220
chrUn_gl000221
chrUn_gl000222
chrUn_gl000223
chrUn_gl000224
chrUn_gl000225
chrUn_gl000226
chrUn_gl000227
chrUn_gl000228
chrUn_gl000229
chrUn_gl000230
chrUn_gl000231
chrUn_gl000232
chrUn_gl000233
chrUn_gl000234
chrUn_gl000235
chrUn_gl000236
chrUn_gl000237
chrUn_gl000238
chrUn_gl000239
chrUn_gl000240
chrUn_gl000241
chrUn_gl000242
chrUn_gl000243
chrUn_gl000244
chrUn_gl000245
chrUn_gl000246
chrUn_gl000247
chrUn_gl000248
chrUn_gl000249
chrX
chrY
@HD VN:1.6
@SQ SN:chr1 LN:249250621 M5:1b22b98cdeb4a9304cb5d48026a85128 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr2 LN:243199373 M5:a0d9851da00400dec1098a9255ac712e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr3 LN:198022430 M5:641e4338fa8d52a5b781bd2a2c08d3c3 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr4 LN:191154276 M5:23dccd106897542ad87d2765d28a19a1 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr5 LN:180915260 M5:0740173db9ffd264d728f32784845cd7 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr6 LN:171115067 M5:1d3a93a248d92a729ee764823acbbc6b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr7 LN:159138663 M5:618366e953d6aaad97dbe4777c29375e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrX LN:155270560 M5:7e0e2e580297b7764e31dbc80c2540dd UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr8 LN:146364022 M5:96f514a9929e410c6651697bded59aec UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr9 LN:141213431 M5:3e273117f15e0a400f01055d9f393768 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr10 LN:135534747 M5:988c28e000e84c26d552359af1ea2e1d UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr11 LN:135006516 M5:98c59049a2df285c76ffb1c6db8f8b96 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr12 LN:133851895 M5:51851ac0e1a115847ad36449b0015864 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr13 LN:115169878 M5:283f8d7892baa81b510a015719ca7b0b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr14 LN:107349540 M5:98f3cae32b2a2e9524bc19813927542e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr15 LN:102531392 M5:e5645a794a8238215b2cd77acb95a078 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr16 LN:90354753 M5:fc9b1a7b42b97a864f56b348b06095e6 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr17 LN:81195210 M5:351f64d4f4f9ddd45b35336ad97aa6de UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr18 LN:78077248 M5:b15d4b2d29dde9d3e4f93d1d0f2cbc9c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr20 LN:63025520 M5:0dec9660ec1efaaf33281c0d5ea2560f UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrY LN:59373566 M5:1e86411d73e6f00a10590f976be01623 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr19 LN:59128983 M5:1aacd71f30db8e561810913e0b72636d UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr22 LN:51304566 M5:a718acaa6135fdca8357d5bfe94211dd UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr21 LN:48129895 M5:2979a6085bfe28e3ad6f552f361ed74d UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr6_ssto_hap7 LN:4928567 M5:3b6d666200e72bcc036bf88a4d7e0749 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr6_mcf_hap5 LN:4833398 M5:efed415dd8742349cb7aaca054675b9a UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr6_cox_hap2 LN:4795371 M5:18c17e1641ef04873b15f40f6c8659a4 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr6_mann_hap4 LN:4683263 M5:9d51d4152174461cd6715c7ddc588dc8 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr6_apd_hap1 LN:4622290 M5:fe71bc63420d666884f37a3ad79f3317 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr6_qbl_hap6 LN:4611984 M5:094d037050cad692b57ea12c4fef790f UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr6_dbb_hap3 LN:4610396 M5:2a3c677c426a10e137883ae1ffb8da3f UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr17_ctg5_hap1 LN:1680828 M5:d89517b400226d3b56e753972a7cad67 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr4_ctg9_hap1 LN:590426 M5:fa24f81b680df26bcfb6d69b784fbe36 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr1_gl000192_random LN:547496 M5:325ba9e808f669dfeee210fdd7b470ac UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000225 LN:211173 M5:63945c3e6962f28ffd469719a747e73c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr4_gl000194_random LN:191469 M5:6ac8f815bf8e845bb3031b73f812c012 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr4_gl000193_random LN:189789 M5:dbb6e8ece0b5de29da56601613007c2a UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr9_gl000200_random LN:187035 M5:75e4c8d17cd4addf3917d1703cacaf25 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000222 LN:186861 M5:6fe9abac455169f50470f5a6b01d0f59 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000212 LN:186858 M5:563531689f3dbd691331fd6c5730a88b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr7_gl000195_random LN:182896 M5:5d9ec007868d517e73543b005ba48535 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000223 LN:180455 M5:399dfa03bf32022ab52a846f7ca35b30 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000224 LN:179693 M5:d5b2fc04f6b41b212a4198a07f450e20 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000219 LN:179198 M5:f977edd13bac459cb2ed4a5457dba1b3 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr17_gl000205_random LN:174588 M5:d22441398d99caf673e9afb9a1908ec5 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000215 LN:172545 M5:5eb3b418480ae67a997957c909375a73 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000216 LN:172294 M5:642a232d91c486ac339263820aef7fe0 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000217 LN:172149 M5:6d243e18dea1945fb7f2517615b8f52e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr9_gl000199_random LN:169874 M5:569af3b73522fab4b40995ae4944e78e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000211 LN:166566 M5:7daaa45c66b288847b9b32b964e623d3 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000213 LN:164239 M5:9d424fdcc98866650b58f004080a992a UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000220 LN:161802 M5:fc35de963c57bf7648429e6454f1c9db UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000218 LN:161147 M5:1d708b54644c26c7e01c2dad5426d38c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr19_gl000209_random LN:159169 M5:f40598e2a5a6b26e84a3775e0d1e2c81 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000221 LN:155397 M5:3238fb74ea87ae857f9c7508d315babb UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000214 LN:137718 M5:46c2032c37f2ed899eb41c0473319a69 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000228 LN:129120 M5:c5a17c97e2c1a0b6a9cc5a6b064b714f UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000227 LN:128374 M5:a4aead23f8053f2655e468bcc6ecdceb UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr1_gl000191_random LN:106433 M5:d75b436f50a8214ee9c2a51d30b2c2cc UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr19_gl000208_random LN:92689 M5:aa81be49bf3fe63a79bdc6a6f279abf6 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr9_gl000198_random LN:90085 M5:868e7784040da90d900d2d1b667a1383 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr17_gl000204_random LN:81310 M5:efc49c871536fa8d79cb0a06fa739722 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000233 LN:45941 M5:7fed60298a8d62ff808b74b6ce820001 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000237 LN:45867 M5:e0c82e7751df73f4f6d0ed30cdc853c0 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000230 LN:43691 M5:b4eb71ee878d3706246b7c1dbef69299 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000242 LN:43523 M5:2f8694fc47576bc81b5fe9e7de0ba49e UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000243 LN:43341 M5:cc34279a7e353136741c9fce79bc4396 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000241 LN:42152 M5:ef4258cdc5a45c206cea8fc3e1d858cf UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000236 LN:41934 M5:fdcd739913efa1fdc64b6c0cd7016779 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000240 LN:41933 M5:445a86173da9f237d7bcf41c6cb8cc62 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr17_gl000206_random LN:41001 M5:43f69e423533e948bfae5ce1d45bd3f1 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000232 LN:40652 M5:3e06b6741061ad93a8587531307057d8 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000234 LN:40531 M5:93f998536b61a56fd0ff47322a911d4b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr11_gl000202_random LN:40103 M5:06cbf126247d89664a4faebad130fe9c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000238 LN:39939 M5:131b1efc3270cc838686b54e7c34b17b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000244 LN:39929 M5:0996b4475f353ca98bacb756ac479140 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000248 LN:39786 M5:5a8e43bec9be36c7b49c84d585107776 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr8_gl000196_random LN:38914 M5:d92206d1bb4c3b4019c43c0875c06dc0 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000249 LN:38502 M5:1d78abec37c15fe29a275eb08d5af236 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000246 LN:38154 M5:e4afcd31912af9d9c2546acf1cb23af2 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr17_gl000203_random LN:37498 M5:96358c325fe0e70bee73436e8bb14dbd UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr8_gl000197_random LN:37175 M5:6f5efdd36643a9b8c8ccad6f2f1edc7b UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000245 LN:36651 M5:89bc61960f37d94abf0df2d481ada0ec UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000247 LN:36422 M5:7de00226bb7df1c57276ca6baabafd15 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr9_gl000201_random LN:36148 M5:dfb7e7ec60ffdcb85cb359ea28454ee9 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000235 LN:34474 M5:118a25ca210cfbcdfb6c2ebb249f9680 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000239 LN:33824 M5:99795f15702caec4fa1c4e15f8a29c07 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr21_gl000210_random LN:27682 M5:851106a74238044126131ce2a8e5847c UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000231 LN:27386 M5:ba8882ce3a1efa2080e5d29b956568a4 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000229 LN:19913 M5:d0f40ec87de311d8e715b52e4c7062e1 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrM LN:16571 M5:d2ed829b8a1628d16cbeee88e88e39eb UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chrUn_gl000226 LN:15008 M5:1c1b2cd1fccbc0a99b6a447fa24d1504 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
@SQ SN:chr18_gl000207_random LN:4262 M5:f3814841f1939d3ca19072d9e89f3fd7 UR:file:/mnt/lustre/scratch/home/usc/mg/jzb/NORMALIZATION/hg19.fa
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment