automation on macOS 10.11.6 - Homebrew build logs

# automation - 2016-09-20_16-11-52.txt

Homebrew build logs for automation on macOS 10.11.6
Build date: 2016-09-20 16:11:52

00.config.out

HOMEBREW_VERSION: 0.9.9
ORIGIN: https://github.com/Homebrew/brew.git
HEAD: f6fef7cdce5302ae6f3fed357612d31d1d08cd5a
Last commit: 5 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: f58fdfd9c4d4060b5cb5cad45980b634e5f5c405
Core tap last commit: 8 hours ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_REPOSITORY: /usr/local/Homebrew
HOMEBREW_CELLAR: /usr/local/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://homebrew.bintray.com
CPU: octa-core 64-bit haswell
Homebrew Ruby: 2.0.0-p648
Clang: 7.3 build 703
Git: 2.9.3 => /usr/local/bin/git
Perl: /usr/local/bin/perl => /usr/local/Cellar/perl/5.24.0_1/bin/perl
Python: /Users/jonathan/miniconda3/bin/python => /Users/jonathan/miniconda3/bin/python3.5
Ruby: /usr/local/bin/ruby => /usr/local/Cellar/ruby/2.3.1/bin/ruby
Java: N/A
macOS: 10.11.6-x86_64
Xcode: 7.3.1
CLT: 7.3.1.0.1.1461711523
X11: 2.7.9 => /opt/X11

00.doctor.out

Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry and just ignore them. Thanks!

Warning: Anaconda is known to frequently break Homebrew builds, including Vim and
MacVim, due to bundling many duplicates of system and Homebrew-available
tools.

If you encounter a build failure please temporarily remove Anaconda
from your $PATH and attempt the build again prior to reporting the
failure to us. Thanks!

Warning: python is symlinked to python3
This will confuse build scripts and in general lead to subtle breakage.

Warning: "config" scripts exist outside your system or Homebrew directories.
`./configure` scripts often look for *-config scripts to determine if
software packages are installed, and what additional flags to use when
compiling and linking.

Having additional scripts in your path can confuse software installed via
Homebrew if the config script overrides a system or Homebrew provided
script of the same name. We found the following "config" scripts:
    /Users/jonathan/miniconda3/bin/python3-config
    /Users/jonathan/miniconda3/bin/python3.5-config
    /Users/jonathan/miniconda3/bin/python3.5m-config

Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected dylibs:
    /usr/local/lib/libtcl8.6.dylib
    /usr/local/lib/libtk8.6.dylib

Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected header files:
    /usr/local/include/fakemysql.h
    /usr/local/include/fakepq.h
    /usr/local/include/fakesql.h
    /usr/local/include/itcl.h
    /usr/local/include/itcl2TclOO.h
    /usr/local/include/itclDecls.h
    /usr/local/include/itclInt.h
    /usr/local/include/itclIntDecls.h
    /usr/local/include/itclMigrate2TclCore.h
    /usr/local/include/itclTclIntStubsFcn.h
    /usr/local/include/mysqlStubs.h
    /usr/local/include/odbcStubs.h
    /usr/local/include/pqStubs.h
    /usr/local/include/tcl.h
    /usr/local/include/tclDecls.h
    /usr/local/include/tclOO.h
    /usr/local/include/tclOODecls.h
    /usr/local/include/tclPlatDecls.h
    /usr/local/include/tclThread.h
    /usr/local/include/tclTomMath.h
    /usr/local/include/tclTomMathDecls.h
    /usr/local/include/tdbc.h
    /usr/local/include/tdbcDecls.h
    /usr/local/include/tdbcInt.h
    /usr/local/include/tk.h
    /usr/local/include/tkDecls.h
    /usr/local/include/tkPlatDecls.h

Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected .pc files:
    /usr/local/lib/pkgconfig/tcl.pc
    /usr/local/lib/pkgconfig/tk.pc

Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected static libraries:
    /usr/local/lib/libtclstub8.6.a
    /usr/local/lib/libtkstub8.6.a

Warning: You have unlinked kegs in your Cellar
Leaving kegs unlinked can lead to build-trouble and cause brews that depend on
those kegs to fail to run properly once built. Run `brew link` on these:
    htop

Warning: Homebrew's sbin was not found in your PATH but you have installed
formulae that put executables in /usr/local/sbin.
Consider setting the PATH for example like so
  echo 'export PATH="/usr/local/sbin:$PATH"' >> ~/.bash_profile

Warning: Some installed formula are missing dependencies.
You should `brew install` the missing dependencies:
  brew install doxygen

Run `brew missing` for more details.

01.configure

2016-09-20 16:11:52 -0700

./configure
--disable-debug
--disable-dependency-tracking
--disable-silent-rules
--prefix=/usr/local/Cellar/automation/0.0.3


HOMEBREW_VERSION: 0.9.9
ORIGIN: https://github.com/Homebrew/brew.git
HEAD: f6fef7cdce5302ae6f3fed357612d31d1d08cd5a
Last commit: 5 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: f58fdfd9c4d4060b5cb5cad45980b634e5f5c405
Core tap last commit: 8 hours ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_REPOSITORY: /usr/local/Homebrew
HOMEBREW_CELLAR: /usr/local/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://homebrew.bintray.com
CPU: octa-core 64-bit haswell
Homebrew Ruby: 2.0.0-p648
GCC-4.2: build 0
Clang: 7.3 build 703
Git: 2.7.4 => /Applications/Xcode.app/Contents/Developer/usr/bin/git
Perl: /usr/bin/perl
Python: /usr/bin/python
Ruby: /usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/2.0/usr/bin/ruby
Java: N/A
macOS: 10.11.6-x86_64
Xcode: 7.3.1
CLT: 7.3.1.0.1.1461711523
X11: 2.7.9 => /opt/X11

HOMEBREW_CC: clang
HOMEBREW_CXX: clang++
SDKROOT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.11.sdk
MAKEFLAGS: -j8
CMAKE_PREFIX_PATH: /usr/local
CMAKE_INCLUDE_PATH: /usr/include/libxml2:/opt/X11/include:/opt/X11/include/freetype2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
CMAKE_LIBRARY_PATH: /opt/X11/lib:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
MACOSX_DEPLOYMENT_TARGET: 10.11
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.11:/opt/X11/lib/pkgconfig:/opt/X11/share/pkgconfig
ACLOCAL_PATH: /usr/local/share/aclocal:/opt/X11/share/aclocal
PATH: /usr/local/Homebrew/Library/Homebrew/shims/super:/opt/X11/bin:/usr/bin:/bin:/usr/sbin:/sbin