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jccaicedo/decode_ground_truth_bbbc039.py

Last active December 3, 2023 03:13
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decode_ground_truth_bbbc039.py
# Example instructions to decode ground truth masks in BBBC039
# Masks available at: https://data.broadinstitute.org/bbbc/BBBC039/masks.zip
import skimage.io
import matplotlib.pyplot as plt
import skimage.morphology
# Load one image after uncompressing masks.zip
gt = skimage.io.imread("IXMtest_A02_s1_w1051DAA7C-7042-435F-99F0-1E847D9B42CB.png")
# Keep first channel only
gt = gt[:,:,0]
# Label independent connected components
gt = skimage.morphology.label(gt)
# Display image or use as needed
plt.imshow(gt)
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