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# Example instructions to decode ground truth masks in BBBC039 | |
# Masks available at: https://data.broadinstitute.org/bbbc/BBBC039/masks.zip | |
import skimage.io | |
import matplotlib.pyplot as plt | |
import skimage.morphology | |
# Load one image after uncompressing masks.zip | |
gt = skimage.io.imread("IXMtest_A02_s1_w1051DAA7C-7042-435F-99F0-1E847D9B42CB.png") | |
# Keep first channel only | |
gt = gt[:,:,0] | |
# Label independent connected components | |
gt = skimage.morphology.label(gt) | |
# Display image or use as needed | |
plt.imshow(gt) |
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