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Jean-Christophe Fillion-Robin jcfr

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@jcfr
jcfr / Slicer-CTChest-VR-properties.py
Last active August 29, 2015 14:16
n = getNodes('vtkMRMLGPURayCastVolumeRenderingDisplayNode*').values()[0]
highDef = n.GetPerformanceControl() == slicer.vtkMRMLVolumeRenderingDisplayNode.MaximumQuality
v = getNode('CTChest')
minSpacing = 1.0
if v.GetMinSpacing() > 0:
minSpacing = v.GetMinSpacing()
sampleDistance = minSpacing / n.GetEstimatedSampleDistance()
@jcfr
jcfr / 2015-04-06_Slicer-r24159_EMSegCL_Task_HumanEye_BRAINS_small-fail
Last active August 29, 2015 14:18
The test "EMSegCL_Task_HumanEye_BRAINS_small" intermittently fails. This gist show the difference of output FAIL vs PASS
kitware@factory-south-ubuntu:~/Dashboards/Nightly/Slicer-0-build/Slicer-build$ ~/Dashboards/Support/cmake-3.1.0-rc3-Linux-x86_64/bin/ctest -R EMSegCL_Task_HumanEye_BRAINS_small -V
UpdateCTestConfiguration from :/home/kitware/Dashboards/Nightly/Slicer-0-build/Slicer-build/DartConfiguration.tcl
Parse Config file:/home/kitware/Dashboards/Nightly/Slicer-0-build/Slicer-build/DartConfiguration.tcl
Add coverage exclude regular expressions.
Add coverage exclude: /CMakeFiles/CMakeTmp/
Add coverage exclude: .*/moc_.*
Add coverage exclude: .*/ui_.*
Add coverage exclude: .*/qrc_.*
Add coverage exclude: .*/Testing/.*
Add coverage exclude: .*Python.cxx
@jcfr
jcfr / FindPythonQt.cmake
Last active August 29, 2015 14:23
Possible patch to address issue reported by Caroline Essert on June 25, 2015. See http://slicer-devel.65872.n3.nabble.com/Problem-building-CTK-PythonQt-tp4034371p4034402.html
# Find PythonQt
#
# Sets PYTHONQT_FOUND, PYTHONQT_INCLUDE_DIR, PYTHONQT_LIBRARY, PYTHONQT_LIBRARIES
#
# Python is required
find_package(PythonLibs)
if(NOT PYTHONLIBS_FOUND)
message(FATAL_ERROR "error: Python is required to build PythonQt")
endif()
@jcfr
jcfr / CMakeLists.txt
Last active September 2, 2015 17:50
Illustrate issue with file(INSTALL ....) function on MacOSX
cmake_minimum_required(VERSION 2.8.6)
file(WRITE "${CMAKE_SOURCE_DIR}/foo.cpp"
"
class foo
{
public:
foo(){}
~foo(){}
};
@jcfr
jcfr / CMakeLists.txt
Created May 28, 2010 16:54
#-----------------------------------------------------------------------------
project(TestGitCmd)
#-----------------------------------------------------------------------------
#-----------------------------------------------------------------------------
cmake_minimum_required(VERSION 2.8)
#-----------------------------------------------------------------------------
find_program(git_EXECUTABLE
NAMES git.cmd git eg.cmd eg
@jcfr
jcfr / Update Slicer CLI buildsystem to download test data fom midas.ipynb
Last active September 17, 2015 04:09
Convenient script useful to update CMakeLists.txt of Slicer CLI modules
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@jcfr
jcfr / add_license.sh
Created September 12, 2011 20:20
license_file=~/Projects/Visomics/NOTICE
while read i;
do
echo "Checking $i"
if ! grep -q Copyright $i
then
echo "=> Updating $i"
cat $license_file $i >$i.new && mv $i.new $i
@jcfr
jcfr / slicer-4.0-module-description.xsl
Created October 21, 2011 03:49
slicer-4.0-module-description.xsl
<?xml version="1.0" encoding="UTF-8"?>
<xsl:transform version="1.0"
xmlns:xsl="http://www.w3.org/1999/XSL/Transform">
<xsl:output method="text" indent="yes" encoding="UTF-8"/>
<xsl:template name="newline"><xsl:text>&#10;</xsl:text></xsl:template>
<!-- Source: http://geekswithblogs.net/Erik/archive/2008/04/01/120915.aspx -->
<xsl:template name="string-replace-all">
@jcfr
jcfr / slicer-4.0-module-category.xsl
Created October 21, 2011 03:50
slicer-4.0-module-category.xsl
<?xml version="1.0" encoding="UTF-8"?>
<xsl:transform version="1.0"
xmlns:xsl="http://www.w3.org/1999/XSL/Transform">
<xsl:output method="text" indent="yes" encoding="UTF-8"/>
<xsl:template match="/executable">
<xsl:value-of select="category" />
</xsl:template>
@jcfr
jcfr / slicer-4.0-module-parameterdescription.xsl
Last active September 27, 2015 17:08
slicer-4.0-module-parameterdescription.xslThe XSLT understands nested parameter tag (Thanks Julien)
<?xml version="1.0" encoding="UTF-8"?>
<xsl:transform version="1.0"
xmlns:xsl="http://www.w3.org/1999/XSL/Transform">
<xsl:output method="text" indent="yes" encoding="UTF-8"/>
<xsl:template name="newline"><xsl:text>&#10;</xsl:text></xsl:template>
<!-- See http://na-mic.org/Mantis/view.php?id=2536 -->
<xsl:template match="name"> (<xsl:value-of select="."/>)</xsl:template>