jdblischak

#!/usr/bin/env python

# Unfollow all Twitter accounts that aren't following you back
#
# Twitter API:
#   https://developer.twitter.com/en/docs/twitter-api
#   https://github.com/python-twitter-tools/twitter
#   https://developer.twitter.com/en/portal/projects/new
# 
# Authentication:

jdblischak

Additional_repositories
Author
Authors@R
Biarch
BugReports
BuildVignettes
Built
ByteCompile
Classification/ACM
Classification/ACM-2012

jdblischak

calc3 <- function(sets)
{
  sets <- check_sets(sets)
  set_lengths <- vapply(sets, length, 0)
  set_order <- order(set_lengths)
  sets <- sets[set_order]
  set_lengths <- set_lengths[set_order]
  
  n_sets <- length(sets)
  set_names <- names(sets)

jdblischak

#!/usr/bin/env Rscript

# Do CRAN packages that depend on the stats package use a copyleft license?
# https://twitter.com/cimentadaj/status/1154420408508043264

Sys.Date()
## [1] "2019-07-26"

library(stringr)

jdblischak

# Example Snakemake pipeline
#
# This example snakefile performs the following steps:
#
# * Downloads an Excel file
# * Converts the file to CSV format
# * Plots a result
# * Creates a summary report
#
# LICENSE: CC0. Do what you want with the code, but it has no guarantees.

jdblischak

#!/usr/bin/env Rscript

# This example code implements the fork and pull request workflow for GitHub
# directly from R using the packages gh and git2r. gh provides an R interface to
# the GitHub REST API v3, and git2r provides an R interface to libgit2. It
# submits the Pull Request to the practice repository Spoon-Knife.
#
# The following sequence of steps are performed:
#
# authenticate -> fork -> clone -> branch -> edit -> add -> commit -> push ->

jdblischak

#!/usr/bin/env conda-execute

# Helper script to identify conda-forge R packages that have more recent
# versions released on CRAN.
#
# Usage:
#
#   conda execute conda-forge-cran.R
#
#   or

jdblischak

# HGEN 473 - Genomics
# Spring 2017
# Tuesday, May 9 & Thursday, May 11
#
# RNA-seq analysis with R/Bioconductor
#
# John Blischak
#
# Last updated: 2020-04-08

jdblischak

NAME := main

all: $(NAME).pdf

%.pdf: %.tex
	sed -i s/'\\includeonly'/'%\\includeonly'/ $(NAME).tex
	pdflatex -shell-escape $(NAME)
	# Insert additional calls to  pdflatex or bibtex here,
	# depending on the complexity of your document

jdblischak

#!/bin/bash

# Install local copy of R from source.

# To run:
#   bash build-r.sh >& log.txt

# Version of R to install (must be part of the R 3.0 series)
VERSION=3.3.2
# Directory to install R. If not already present, creates bin, lib and share