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jdswinbank/gist:1516422d4c2465a8290f3b98a8ef2fda

Created August 7, 2020 16:49
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gistfile1.txt
(lsst-scipipe-1a1d771) bash-4.2$ ./bin/run_demo.sh
+ '[' '!' -f DATA_REPO/butler.yaml ']'
+ butler create DATA_REPO
Downloading https://hpiers.obspm.fr/iers/bul/bulc/Leap_Second.dat
|=========================================================================================================================================================================================================| 1.3k/1.3k (100.00%) 0s
+ butler register-instrument DATA_REPO lsst.obs.subaru.HyperSuprimeCam
+ '[' '!' -d DATA_REPO/HSC/calib ']'
+ butler import DATA_REPO /mnt/lsst/src/lsst/pipelines_check/export_dir --export-file /mnt/lsst/src/lsst/pipelines_check/export_dir/export.yaml --output-run shared/ci_hsc --skip-dimensions instrument,physical_filter,detector
++ find -L DATA_REPO/HSC/raw -type f
find: 'DATA_REPO/HSC/raw': No such file or directory
+ '[' -z '' ']'
+ butler ingest-raws DATA_REPO --dir export_dir/HSC/raw/all/raw/r/HSC-R/
+ butler define-visits DATA_REPO -i HSC --collections HSC/raw/all
Downloading ftp://cddis.gsfc.nasa.gov/pub/products/iers/finals2000A.all
|=========================================================================================================================================================================================================| 3.3M/3.3M (100.00%) 3s
+ export OMP_NUM_THREADS=1
+ OMP_NUM_THREADS=1
+ pipetask run -d 'exposure=903342 AND detector=10' -j 1 -b DATA_REPO/butler.yaml -i HSC/calib,HSC/raw/all,ref_cats,shared/ci_hsc --register-dataset-types -p /opt/lsst/software/stack/stack/miniconda3-py37_4.8.2-1a1d771/Linux64/pipe_tasks/20.0.0-14-g7cb2d310/pipelines/ProcessCcd.yaml --instrument lsst.obs.subaru.HyperSuprimeCam --output-run demo_collection
ctrl.mpexec.cmdLineFwk INFO: QuantumGraph contains 3 quanta for 3 tasks
afw.image.MaskedImageFitsReader WARN: Mask unreadable (FitsReader not initialized; desired HDU is probably missing.); using default
Caught signal 11, backtrace follows:
/opt/lsst/software/stack/stack/miniconda3-py37_4.8.2-1a1d771/Linux64/utils/20.0.0+3/lib/libutils.so(+0x17364) [0x7f2e67b1b364]
/lib64/libc.so.6(+0x363b0) [0x7f2e6a22a3b0]
/opt/lsst/software/stack/stack/miniconda3-py37_4.8.2-1a1d771/Linux64/afw/20.0.0-4-gde602ef96+5/lib/libafw.so(lsst::afw::image::MaskedImage<float, int, float> lsst::afw::image::MaskedImageFitsReader::read<float, int, float>(lsst::geom::Box2I const&, lsst::afw::image::ImageOrigin, bool, bool, bool)+0x843) [0x7f2e5e0bbf33]
/opt/lsst/software/stack/stack/miniconda3-py37_4.8.2-1a1d771/Linux64/afw/20.0.0-4-gde602ef96+5/lib/libafw.so(lsst::afw::image::MaskedImage<float, int, float> lsst::afw::image::ExposureFitsReader::readMaskedImage<float, int, float>(lsst::geom::Box2I const&, lsst::afw::image::ImageOrigin, bool, bool)+0x1a) [0x7f2e5e0282aa]
/opt/lsst/software/stack/stack/miniconda3-py37_4.8.2-1a1d771/Linux64/afw/20.0.0-4-gde602ef96+5/lib/libafw.so(lsst::afw::image::Exposure<float, int, float> lsst::afw::image::ExposureFitsReader::read<float, int, float>(lsst::geom::Box2I const&, lsst::afw::image::ImageOrigin, bool, bool)+0x28) [0x7f2e5e02aff8]
/opt/lsst/software/stack/stack/miniconda3-py37_4.8.2-1a1d771/Linux64/afw/20.0.0-4-gde602ef96+5/lib/libafw.so(lsst::afw::image::Exposure<float, int, float>::Exposure(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, lsst::geom::Box2I const&, lsst::afw::image::ImageOrigin, bool, bool)+0x2fb) [0x7f2e5e0231bb]
/opt/lsst/software/stack/stack/miniconda3-py37_4.8.2-1a1d771/Linux64/afw/20.0.0-4-gde602ef96+5/python/lsst/afw/image/exposure/exposure.so(+0x5debb) [0x7f2e5a8fbebb]
/opt/lsst/software/stack/stack/miniconda3-py37_4.8.2-1a1d771/Linux64/afw/20.0.0-4-gde602ef96+5/python/lsst/afw/image/exposure/exposure.so(+0x49212) [0x7f2e5a8e7212]
python((null)+0x24d) [0x563d23bc061d]
python(_PyMethodDef_RawFastCallDict+0x24d) [0x563d23bc061d]
python((null)+0x21) [0x563d23bc07a1]
python(_PyCFunction_FastCallDict+0x21) [0x563d23bc07a1]
python((null)+0x63) [0x563d23bbee03]
python(_PyObject_Call_Prepend+0x63) [0x563d23bbee03]
python(PyObject_Call+0x6e) [0x563d23bb175e]
python(+0x9e52a) [0x563d23b2852a]
python(+0x16bfa7) [0x563d23bf5fa7]
python(PyObject_Call+0x6e) [0x563d23bb175e]
python((null)+0x1f6a) [0x563d23c58d6a]
python(_PyEval_EvalFrameDefault+0x1f6a) [0x563d23c58d6a]
python((null)+0x2f9) [0x563d23b9f8f9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x563d23b9f8f9]
python((null)+0x325) [0x563d23bee985]
python(_PyFunction_FastCallKeywords+0x325) [0x563d23bee985]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0x2f9) [0x563d23b9f8f9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x563d23b9f8f9]
python((null)+0x387) [0x563d23bee9e7]
python(_PyFunction_FastCallKeywords+0x387) [0x563d23bee9e7]
python((null)+0x14e7) [0x563d23c582e7]
python(_PyEval_EvalFrameDefault+0x14e7) [0x563d23c582e7]
python((null)+0x2f9) [0x563d23b9f8f9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x563d23b9f8f9]
python((null)+0x387) [0x563d23bee9e7]
python(_PyFunction_FastCallKeywords+0x387) [0x563d23bee9e7]
python((null)+0x14e7) [0x563d23c582e7]
python(_PyEval_EvalFrameDefault+0x14e7) [0x563d23c582e7]
python((null)+0xab8) [0x563d23ba00b8]
python(_PyEval_EvalCodeWithName+0xab8) [0x563d23ba00b8]
python((null)+0x387) [0x563d23bee9e7]
python(_PyFunction_FastCallKeywords+0x387) [0x563d23bee9e7]
python((null)+0x14e7) [0x563d23c582e7]
python(_PyEval_EvalFrameDefault+0x14e7) [0x563d23c582e7]
python((null)+0xab8) [0x563d23ba00b8]
python(_PyEval_EvalCodeWithName+0xab8) [0x563d23ba00b8]
python((null)+0x387) [0x563d23bee9e7]
python(_PyFunction_FastCallKeywords+0x387) [0x563d23bee9e7]
python((null)+0x14e7) [0x563d23c582e7]
python(_PyEval_EvalFrameDefault+0x14e7) [0x563d23c582e7]
python((null)+0xab8) [0x563d23ba00b8]
python(_PyEval_EvalCodeWithName+0xab8) [0x563d23ba00b8]
python((null)+0x387) [0x563d23bee9e7]
python(_PyFunction_FastCallKeywords+0x387) [0x563d23bee9e7]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0x5da) [0x563d23b9fbda]
python(_PyEval_EvalCodeWithName+0x5da) [0x563d23b9fbda]
python((null)+0x387) [0x563d23bee9e7]
python(_PyFunction_FastCallKeywords+0x387) [0x563d23bee9e7]
python((null)+0x4cb9) [0x563d23c5bab9]
python(_PyEval_EvalFrameDefault+0x4cb9) [0x563d23c5bab9]
python((null)+0xab8) [0x563d23ba00b8]
python(_PyEval_EvalCodeWithName+0xab8) [0x563d23ba00b8]
python((null)+0x387) [0x563d23bee9e7]
python(_PyFunction_FastCallKeywords+0x387) [0x563d23bee9e7]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0xfb) [0x563d23bee75b]
python(_PyFunction_FastCallKeywords+0xfb) [0x563d23bee75b]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0xfb) [0x563d23bee75b]
python(_PyFunction_FastCallKeywords+0xfb) [0x563d23bee75b]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0xfb) [0x563d23bee75b]
python(_PyFunction_FastCallKeywords+0xfb) [0x563d23bee75b]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0xab8) [0x563d23ba00b8]
python(_PyEval_EvalCodeWithName+0xab8) [0x563d23ba00b8]
python((null)+0x387) [0x563d23bee9e7]
python(_PyFunction_FastCallKeywords+0x387) [0x563d23bee9e7]
python((null)+0x14e7) [0x563d23c582e7]
python(_PyEval_EvalFrameDefault+0x14e7) [0x563d23c582e7]
python((null)+0xfb) [0x563d23bee75b]
python(_PyFunction_FastCallKeywords+0xfb) [0x563d23bee75b]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0xfb) [0x563d23bee75b]
python(_PyFunction_FastCallKeywords+0xfb) [0x563d23bee75b]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0x2f9) [0x563d23b9f8f9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x563d23b9f8f9]
python((null)+0x325) [0x563d23bee985]
python(_PyFunction_FastCallKeywords+0x325) [0x563d23bee985]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0x2f9) [0x563d23b9f8f9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x563d23b9f8f9]
python((null)+0x325) [0x563d23bee985]
python(_PyFunction_FastCallKeywords+0x325) [0x563d23bee985]
python((null)+0x6a0) [0x563d23c574a0]
python(_PyEval_EvalFrameDefault+0x6a0) [0x563d23c574a0]
python((null)+0x2f9) [0x563d23b9f8f9]
python(_PyEval_EvalCodeWithName+0x2f9) [0x563d23b9f8f9]
python(PyEval_EvalCodeEx+0x44) [0x563d23ba0824]
python(PyEval_EvalCode+0x1c) [0x563d23ba084c]
python(+0x22c684) [0x563d23cb6684]
python(PyRun_FileExFlags+0xa1) [0x563d23cc0ab1]
python(PyRun_SimpleFileExFlags+0x1c3) [0x563d23cc0ca3]
python(+0x237d95) [0x563d23cc1d95]
python((null)+0x3c) [0x563d23cc1ebc]
python(_Py_UnixMain+0x3c) [0x563d23cc1ebc]
/lib64/libc.so.6((null)+0xf5) [0x7f2e6a216505]
/lib64/libc.so.6(__libc_start_main+0xf5) [0x7f2e6a216505]
python(+0x1dcbd0) [0x563d23c66bd0]
./bin/run_demo.sh: line 40: 470 Segmentation fault pipetask run -d "exposure=903342 AND detector=10" -j 1 -b DATA_REPO/butler.yaml -i HSC/calib,HSC/raw/all,ref_cats,shared/ci_hsc --register-dataset-types -p "${PIPE_TASKS_DIR}/pipelines/ProcessCcd.yaml" --instrument lsst.obs.subaru.HyperSuprimeCam --output-run demo_collection
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