Created
March 8, 2021 15:25
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An example of conda environment to run dMaSIF.
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| name: rapids-0.16 | |
| channels: | |
| - anaconda | |
| - rapidsai | |
| - nvidia | |
| - conda-forge | |
| - defaults | |
| dependencies: | |
| - _libgcc_mutex=0.1=conda_forge | |
| - _openmp_mutex=4.5=1_gnu | |
| - abseil-cpp=20200225.2=he1b5a44_2 | |
| - argon2-cffi=20.1.0=py37h4abf009_2 | |
| - arrow-cpp=1.0.1=py37h9631afc_16_cuda | |
| - arrow-cpp-proc=2.0.0=cuda | |
| - async_generator=1.10=py_0 | |
| - attrs=20.3.0=pyhd3deb0d_0 | |
| - aws-c-common=0.4.59=h36c2ea0_1 | |
| - aws-c-event-stream=0.1.6=had2084c_6 | |
| - aws-checksums=0.1.10=h4e93380_0 | |
| - aws-sdk-cpp=1.8.70=h57dc084_1 | |
| - backcall=0.2.0=py_0 | |
| - bleach=3.2.1=pyh9f0ad1d_0 | |
| - bokeh=2.2.3=py37hc8dfbb8_0 | |
| - boost-cpp=1.72.0=h9359b55_3 | |
| - brotli=1.0.9=he1b5a44_3 | |
| - brotlipy=0.7.0=py37hb5d75c8_1001 | |
| - bzip2=1.0.8=h516909a_3 | |
| - c-ares=1.16.1=h516909a_3 | |
| - ca-certificates=2020.12.8=h06a4308_0 | |
| - certifi=2020.12.5=py37h06a4308_0 | |
| - cffi=1.14.4=py37h11fe52a_0 | |
| - chardet=3.0.4=py37he5f6b98_1008 | |
| - click=7.1.2=pyh9f0ad1d_0 | |
| - cloudpickle=1.6.0=py_0 | |
| - colorcet=2.0.1=py_0 | |
| - cryptography=3.2.1=py37hc72a4ac_0 | |
| - cudatoolkit=11.0.221=h6bb024c_0 | |
| - cudf=0.16.0=cuda_11.0_py37_g2b8298f566_0 | |
| - cudnn=8.0.0=cuda11.0_0 | |
| - cuml=0.16.0=cuda11.0_py37_gbbe737348_0 | |
| - cupy=7.8.0=py37h0ce7dbb_0 | |
| - cycler=0.10.0=py_2 | |
| - cytoolz=0.11.0=py37h8f50634_1 | |
| - dask=2.30.0=py_0 | |
| - dask-core=2.30.0=py_0 | |
| - dask-cudf=0.16.0=py37_g2b8298f566_0 | |
| - decorator=4.4.2=py_0 | |
| - defusedxml=0.6.0=py_0 | |
| - distributed=2.30.1=py37h89c1867_0 | |
| - dlpack=0.3=he1b5a44_1 | |
| - entrypoints=0.3=pyhd8ed1ab_1003 | |
| - faiss=1.6.3=py37h88184f0_1_cuda | |
| - faiss-gpu=1.6.3=py37_1 | |
| - faiss-proc=1.0.0=cuda | |
| - fastavro=1.1.1=py37h4abf009_0 | |
| - fastrlock=0.5=py37h3340039_1 | |
| - freetype=2.10.4=h7ca028e_0 | |
| - fsspec=0.8.4=py_0 | |
| - gflags=2.2.2=he1b5a44_1004 | |
| - glog=0.4.0=h49b9bf7_3 | |
| - grpc-cpp=1.33.2=h1870a98_1 | |
| - heapdict=1.0.1=py_0 | |
| - icu=67.1=he1b5a44_0 | |
| - idna=2.10=pyh9f0ad1d_0 | |
| - importlib_metadata=3.1.0=hd8ed1ab_0 | |
| - ipydatawidgets=4.1.0=pyh9f0ad1d_0 | |
| - ipykernel=5.3.4=py37h5ca1d4c_0 | |
| - ipympl=0.5.8=pyh9f0ad1d_0 | |
| - ipython=7.19.0=py37hb070fc8_0 | |
| - ipython_genutils=0.2.0=py37_0 | |
| - ipywidgets=7.5.1=pyh9f0ad1d_1 | |
| - itk=5.1.1=py37hc8dfbb8_3 | |
| - itkwidgets=0.32.0=py37hc8dfbb8_0 | |
| - jedi=0.17.2=py37_0 | |
| - jinja2=2.11.2=pyh9f0ad1d_0 | |
| - joblib=0.17.0=py_0 | |
| - jpeg=9d=h36c2ea0_0 | |
| - json5=0.9.5=pyh9f0ad1d_0 | |
| - jsonschema=3.2.0=py_2 | |
| - jupyter_client=6.1.7=py_0 | |
| - jupyter_core=4.6.3=py37_0 | |
| - jupyterlab=2.2.9=py_0 | |
| - jupyterlab_pygments=0.1.2=pyh9f0ad1d_0 | |
| - jupyterlab_server=1.2.0=py_0 | |
| - kiwisolver=1.3.1=py37hc928c03_0 | |
| - krb5=1.17.2=h926e7f8_0 | |
| - lcms2=2.11=hcbb858e_1 | |
| - ld_impl_linux-64=2.35.1=hed1e6ac_0 | |
| - libblas=3.8.0=17_openblas | |
| - libcblas=3.8.0=17_openblas | |
| - libcudf=0.16.0=cuda11.0_g2b8298f566_0 | |
| - libcuml=0.16.0=cuda11.0_gbbe737348_0 | |
| - libcumlprims=0.16.0=cuda11.0_g1c28023_0 | |
| - libcurl=7.71.1=hcdd3856_8 | |
| - libedit=3.1.20191231=he28a2e2_2 | |
| - libev=4.33=h516909a_1 | |
| - libevent=2.1.10=hcdb4288_3 | |
| - libfaiss=1.6.3=h328c4c8_1_cuda | |
| - libffi=3.2.1=he1b5a44_1007 | |
| - libgcc-ng=9.3.0=h5dbcf3e_17 | |
| - libgfortran-ng=9.3.0=he4bcb1c_17 | |
| - libgfortran5=9.3.0=he4bcb1c_17 | |
| - libgomp=9.3.0=h5dbcf3e_17 | |
| - libhwloc=2.3.0=h3c4fd83_0 | |
| - libiconv=1.16=h516909a_0 | |
| - liblapack=3.8.0=17_openblas | |
| - libllvm10=10.0.1=he513fc3_3 | |
| - libnghttp2=1.41.0=h8cfc5f6_2 | |
| - libopenblas=0.3.10=pthreads_h4812303_5 | |
| - libpng=1.6.37=h21135ba_2 | |
| - libprotobuf=3.13.0.1=h8b12597_0 | |
| - librmm=0.16.0=cuda11.0_g1bcc7b1_0 | |
| - libsodium=1.0.18=h7b6447c_0 | |
| - libssh2=1.9.0=hab1572f_5 | |
| - libstdcxx-ng=9.3.0=h2ae2ef3_17 | |
| - libthrift=0.13.0=h5aa387f_6 | |
| - libtiff=4.1.0=h4f3a223_6 | |
| - libutf8proc=2.5.0=h516909a_2 | |
| - libwebp-base=1.1.0=h36c2ea0_3 | |
| - libxml2=2.9.10=h68273f3_2 | |
| - llvmlite=0.34.0=py37h5202443_2 | |
| - locket=0.2.0=py_2 | |
| - lz4-c=1.9.2=he1b5a44_3 | |
| - markupsafe=1.1.1=py37hb5d75c8_2 | |
| - matplotlib-base=3.3.3=py37h4f6019d_0 | |
| - mistune=0.8.4=py37h4abf009_1002 | |
| - msgpack-python=1.0.0=py37h99015e2_2 | |
| - nbclient=0.5.1=py_0 | |
| - nbconvert=6.0.7=py37h89c1867_3 | |
| - nbformat=5.0.8=py_0 | |
| - nccl=2.7.8.1=h4962215_100 | |
| - ncurses=6.2=h58526e2_4 | |
| - nest-asyncio=1.4.3=pyhd8ed1ab_0 | |
| - notebook=6.1.5=py37h89c1867_0 | |
| - numba=0.51.2=py37h9fdb41a_0 | |
| - numpy=1.19.4=py37h7e9df27_1 | |
| - olefile=0.46=pyh9f0ad1d_1 | |
| - openssl=1.1.1i=h27cfd23_0 | |
| - orc=1.6.5=hd3605a7_0 | |
| - packaging=20.4=pyh9f0ad1d_0 | |
| - pandas=1.1.4=py37h10a2094_0 | |
| - pandoc=2.11.2=h36c2ea0_0 | |
| - pandocfilters=1.4.2=py_1 | |
| - param=1.10.0=py_0 | |
| - parquet-cpp=1.5.1=2 | |
| - parso=0.7.0=py_0 | |
| - partd=1.1.0=py_0 | |
| - pexpect=4.8.0=pyhd3eb1b0_3 | |
| - pickleshare=0.7.5=py37_1001 | |
| - pillow=8.0.1=py37h63a5d19_0 | |
| - pixman-cos6-x86_64=0.32.8=h7062e45_0 | |
| - prometheus_client=0.9.0=pyhd3deb0d_0 | |
| - prompt-toolkit=3.0.8=py_0 | |
| - psutil=5.7.3=py37hb5d75c8_0 | |
| - ptyprocess=0.6.0=pyhd3eb1b0_2 | |
| - pyarrow=1.0.1=py37hbeecfa9_16_cuda | |
| - pycparser=2.20=pyh9f0ad1d_2 | |
| - pyct=0.4.6=py_0 | |
| - pyct-core=0.4.6=py_0 | |
| - pygments=2.7.2=pyhd3eb1b0_0 | |
| - pyopenssl=19.1.0=py_1 | |
| - pyparsing=2.4.7=pyh9f0ad1d_0 | |
| - pyrsistent=0.17.3=py37h4abf009_1 | |
| - pysocks=1.7.1=py37he5f6b98_2 | |
| - python=3.7.8=h8bdb77d_2_cpython | |
| - python-dateutil=2.8.1=py_0 | |
| - python_abi=3.7=1_cp37m | |
| - pytz=2020.4=pyhd8ed1ab_0 | |
| - pyyaml=5.3.1=py37hb5d75c8_1 | |
| - pyzmq=19.0.2=py37he6710b0_1 | |
| - re2=2020.11.01=h58526e2_0 | |
| - readline=8.0=he28a2e2_2 | |
| - requests=2.25.0=pyhd3deb0d_0 | |
| - rmm=0.16.0=cuda_11.0_py37_g1bcc7b1_0 | |
| - scipy=1.5.3=py37h14a347d_0 | |
| - send2trash=1.5.0=py_0 | |
| - setuptools=49.6.0=py37he5f6b98_2 | |
| - six=1.15.0=pyh9f0ad1d_0 | |
| - snappy=1.1.8=he1b5a44_3 | |
| - sortedcontainers=2.3.0=pyhd8ed1ab_0 | |
| - spdlog=1.7.0=hc9558a2_2 | |
| - sqlite=3.33.0=h4cf870e_1 | |
| - tblib=1.6.0=py_0 | |
| - terminado=0.9.1=py37h89c1867_1 | |
| - testpath=0.4.4=py_0 | |
| - tk=8.6.10=hed695b0_1 | |
| - toolz=0.11.1=py_0 | |
| - tornado=6.1=py37h4abf009_0 | |
| - traitlets=5.0.5=py_0 | |
| - traittypes=0.2.1=pyh9f0ad1d_2 | |
| - treelite=0.93=py37h745909e_3 | |
| - typing_extensions=3.7.4.3=py_0 | |
| - ucx=1.8.1+g6b29558=cuda11.0_0 | |
| - ucx-proc=1.0.0=gpu | |
| - ucx-py=0.16.0=py37_g6b29558_0 | |
| - wcwidth=0.2.5=py_0 | |
| - webencodings=0.5.1=py_1 | |
| - wheel=0.35.1=pyh9f0ad1d_0 | |
| - widgetsnbextension=3.5.1=py37h89c1867_4 | |
| - xorg-x11-server-common-cos6-x86_64=1.17.4=he6f580c_0 | |
| - xorg-x11-server-xvfb-cos6-x86_64=1.17.4=h5c27f9d_0 | |
| - xvfbwrapper=0.2.9=py37hc8dfbb8_1003 | |
| - xz=5.2.5=h516909a_1 | |
| - yaml=0.2.5=h516909a_0 | |
| - zeromq=4.3.3=he6710b0_3 | |
| - zict=2.0.0=py_0 | |
| - zipp=3.4.0=py_0 | |
| - zlib=1.2.11=h516909a_1010 | |
| - zstandard=0.14.0=py37h3340039_3 | |
| - zstd=1.4.5=h6597ccf_2 | |
| - pip: | |
| - absl-py==0.11.0 | |
| - alabaster==0.7.12 | |
| - appdirs==1.4.4 | |
| - ase==3.20.1 | |
| - astunparse==1.6.3 | |
| - babel==2.9.0 | |
| - black==20.8b1 | |
| - blosc==1.10.2 | |
| - breathe==4.24.0 | |
| - cached-property==1.5.2 | |
| - cachetools==4.1.1 | |
| - cmake==3.18.4.post1 | |
| - commonmark==0.9.1 | |
| - cupy-cuda100==8.1.0 | |
| - cython==0.29.21 | |
| - dataclasses==0.6 | |
| - dill==0.3.3 | |
| - dipy==1.3.0 | |
| - docutils==0.16 | |
| - easyprocess==0.3 | |
| - fast-histogram==0.9 | |
| - filelock==3.0.12 | |
| - flatbuffers==1.12 | |
| - future==0.18.2 | |
| - gcc7==0.0.7 | |
| - gdown==3.12.2 | |
| - geomloss==0.2.3 | |
| - google-auth==1.23.0 | |
| - google-auth-oauthlib==0.4.2 | |
| - googledrivedownloader==0.4 | |
| - gputil==1.4.0 | |
| - gpytorch==1.2.1 | |
| - grpcio==1.33.2 | |
| - h5py==3.1.0 | |
| - hdbscan==0.8.26 | |
| - humanize==3.1.0 | |
| - imageio==2.9.0 | |
| - imagesize==1.2.0 | |
| - importlib-metadata==2.0.0 | |
| - isodate==0.6.0 | |
| - itk-core==5.1.1.post1 | |
| - itk-filtering==5.1.1.post1 | |
| - itk-numerics==5.1.1.post1 | |
| - itk-registration==5.1.1.post1 | |
| - itk-segmentation==5.1.1.post1 | |
| - jax==0.2.7 | |
| - jaxlib==0.1.57+cuda102 | |
| - jsonpatch==1.28 | |
| - jsonpointer==2.0 | |
| - markdown==3.3.3 | |
| - meshio==4.3.5 | |
| - mpl-scatter-density==0.7 | |
| - multiprocess==0.70.11.1 | |
| - multiprocessing-on-dill==3.5.0a4 | |
| - mypy-extensions==0.4.3 | |
| - networkx==2.5 | |
| - nibabel==3.2.0 | |
| - oauthlib==3.1.0 | |
| - opencv-python==4.4.0.46 | |
| - opt-einsum==3.3.0 | |
| - parsley==1.3 | |
| - pathspec==0.8.1 | |
| - piglet==1.0.0 | |
| - piglet-templates==1.0.0 | |
| - pip==20.3.3 | |
| - plotly==4.13.0 | |
| - plyfile==0.7.2 | |
| - pot==0.7.0 | |
| - protobuf==3.14.0 | |
| - pyasn1==0.4.8 | |
| - pyasn1-modules==0.2.8 | |
| - pykeops==1.4.1 | |
| - pynndescent==0.5.1 | |
| - python-deprecated==1.1.0 | |
| - python-louvain==0.14 | |
| - pyvirtualdisplay==1.3.2 | |
| - pyvista==0.27.2 | |
| - pyvtk==0.5.18 | |
| - pywavelets==1.1.1 | |
| - rdflib==5.0.0 | |
| - recommonmark==0.6.0 | |
| - regex==2020.11.13 | |
| - requests-oauthlib==1.3.0 | |
| - retrying==1.3.3 | |
| - rsa==4.6 | |
| - scikit-fmm==2021.1.21 | |
| - scikit-image==0.17.2 | |
| - scikit-learn==0.23.2 | |
| - scooby==0.5.6 | |
| - seaborn==0.11.1 | |
| - si-prefix==1.2.2 | |
| - simpleitk==1.2.4 | |
| - snowballstemmer==2.0.0 | |
| - sphinx==3.3.1 | |
| - sphinx-gallery==0.8.1 | |
| - sphinx-rtd-theme==0.5.0 | |
| - sphinxcontrib-applehelp==1.0.2 | |
| - sphinxcontrib-devhelp==1.0.2 | |
| - sphinxcontrib-htmlhelp==1.0.3 | |
| - sphinxcontrib-httpdomain==1.7.0 | |
| - sphinxcontrib-jsmath==1.0.1 | |
| - sphinxcontrib-qthelp==1.0.3 | |
| - sphinxcontrib-serializinghtml==1.1.4 | |
| - tensorboard==2.4.0 | |
| - tensorboard-plugin-wit==1.7.0 | |
| - threadpoolctl==2.1.0 | |
| - tifffile==2020.11.18 | |
| - toml==0.10.2 | |
| - torch==1.7.0 | |
| - torch-cluster==1.5.8 | |
| - torch-geometric==1.6.3 | |
| - torch-scatter==2.0.5 | |
| - torch-sparse==0.6.8 | |
| - torch-spline-conv==1.2.0 | |
| - torchdiffeq==0.2.1 | |
| - torchfile==0.1.0 | |
| - torchio==0.17.53 | |
| - torchvision==0.8.1 | |
| - tqdm==4.52.0 | |
| - treelite-runtime==0.93 | |
| - typed-ast==1.4.1 | |
| - umap-learn==0.5.0 | |
| - urllib3==1.26.2 | |
| - visdom==0.1.8.9 | |
| - vtk==9.0.1 | |
| - websocket-client==0.57.0 | |
| - werkzeug==1.0.1 | |
| prefix: /vol/bitbucket/jfeydy/miniconda3/envs/rapids-0.16 |
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