jeanjar/controle_adicionar_geno.php

## controle_adicionar_geno.php
<html>
    <head><title></title>
        <meta http-equiv="content-type" content="text/html; charset=UTF-8"/>
    </head>
    <body>


        <?php
        /*
          // --- php.ini
          max_execution_time = 18000
          memory_limit = 128M
          post_max_size = 200M
          upload_max_filesize = 200M
          // -- php.ini
         */
        if ($_POST['banco'] == "") {
            echo "Escolha um banco valido";
            echo "<br/><a href='../visao/adicionar_geno.php'>Voltar</a>";
        } elseif ($_FILES['uploadedfile']['name'] == "") {
            echo "Nenhum arquivo foi selecionado";
            echo "<br/><a href='../visao/adicionar_geno.php'>Voltar</a>";
        } else {
			echo $_POST['banco']."<br/>";
            echo "time limit\t";
            echo ini_get("time_limit");
            echo "<br/>";
            echo "max execution time\t";
            echo ini_get('max_execution_time');
            echo "<br/>";
            echo "Post max size\t";
            echo ini_get("post_max_size");
            echo "<br />";
            echo "memory limit\t";
            echo ini_get("memory_limit");
            echo "<br />";
            echo "upload max filesize\t";
            echo ini_get("upload_max_filesize");

            $uploaddir = '../upload/geno/';
            $uploadfile = $uploaddir . basename($_FILES['uploadedfile']['name']);
            echo '<pre>';
            if (move_uploaded_file($_FILES['uploadedfile']['tmp_name'], $uploadfile)) {
                echo "O arquivo é válido, e foi enviado com sucesso.\n";
                echo "<br/>";
            } else {
                echo "Possible file upload attack!\n";
            }

            echo 'Informacoes:';
            print_r($_FILES);

            switch ($_FILES['uploadedfile']['error']) {
                case 0:
                    echo "There is no error, the file uploaded with success. ";
                    break;
                case 1:
                    echo "The uploaded file exceeds the upload_max_filesize directive in php.ini.";
                    break;
                case 2:
                    echo "The uploaded file exceeds the MAX_FILE_SIZE directive that was specified in the HTML form.";
                    break;
                case 3:
                    echo "The uploaded file was only partially uploaded. ";
                    break;
                case 4:
                    echo "No file was uploaded. ";
                    break;
                case 6:
                    echo "Missing a temporary folder. Introduced in PHP 4.3.10 and PHP 5.0.3. ";
                    break;
                case 7:
                    echo "Failed to write file to disk. Introduced in PHP 5.1.0. ";
                    break;
                case 8:
                    echo "A PHP extension stopped the file upload. PHP does not provide a way to ascertain which extension caused the file upload to stop; examining the list of loaded extensions with phpinfo() may help. Introduced in PHP 5.2.0.";
                    break;
            }
            print "</pre>";


            $link = mysql_connect('localhost', 'root', '') or die('N�o foi poss�vel conectar: ' . mysql_error());

            mysql_select_db('metagenoma') or die('N�o foi poss�vel selecionar o banco da dados');

            set_time_limit(0);
            $char = null;
            echo "<br/>";
            $arquivo = fopen($uploadfile, 'r');
            while (!feof($arquivo)) {
                $char .= fgetc($arquivo);
            }
            fclose($arquivo);

            $huhu = (explode("\n", $char, -1));
            $tamanho = count($huhu);

            $banco = $_POST["banco"];
            $gi = NULL;
            $sequencia = NULL;
            for ($i = 0; $i <= $tamanho - 1; $i++) {
                if (substr($huhu[$i], 0, 1) == ">") {
                    if ($gi != "") {
                        //echo "$gi <br/> $run </br> $sequencia</br>";
						//$sql = "INSERT INTO `geno` (`banco`, `id_read`, `run`, `sequencia`) VALUES ('$banco', '$gi', '$run', '$sequencia');";
						//$query = mysql_query($sql);
                        $sequencia = "";
                    }
                    $gi = substr($huhu[$i], 0, 15);
                    $run = substr($huhu[$i], 16, strlen($huhu[$i]));
                } else {
                    $sequencia .= $huhu[$i];
                }
            }
            //echo "$gi <br/> $run </br> $sequencia</br>";
			//$sql = "INSERT INTO `geno` (`banco`, `id_read`, `run`, `sequencia`) VALUES ('$banco', '$gi', '$run', '$sequencia');";
			//$query = mysql_query($sql);
            mysql_close($link);
        }

        ?>
    </body>
</html>
	<html>
	<head><title></title>
	<meta http-equiv="content-type" content="text/html; charset=UTF-8"/>
	</head>
	<body>


	<?php
	/*
	// --- php.ini
	max_execution_time = 18000
	memory_limit = 128M
	post_max_size = 200M
	upload_max_filesize = 200M
	// -- php.ini
	*/
	if ($_POST['banco'] == "") {
	echo "Escolha um banco valido";
	echo "<br/><a href='../visao/adicionar_geno.php'>Voltar</a>";
	} elseif ($_FILES['uploadedfile']['name'] == "") {
	echo "Nenhum arquivo foi selecionado";
	echo "<br/><a href='../visao/adicionar_geno.php'>Voltar</a>";
	} else {
	echo $_POST['banco']."<br/>";
	echo "time limit\t";
	echo ini_get("time_limit");
	echo "<br/>";
	echo "max execution time\t";
	echo ini_get('max_execution_time');
	echo "<br/>";
	echo "Post max size\t";
	echo ini_get("post_max_size");
	echo "<br />";
	echo "memory limit\t";
	echo ini_get("memory_limit");
	echo "<br />";
	echo "upload max filesize\t";
	echo ini_get("upload_max_filesize");

	$uploaddir = '../upload/geno/';
	$uploadfile = $uploaddir . basename($_FILES['uploadedfile']['name']);
	echo '<pre>';
	if (move_uploaded_file($_FILES['uploadedfile']['tmp_name'], $uploadfile)) {
	echo "O arquivo é válido, e foi enviado com sucesso.\n";
	echo "<br/>";
	} else {
	echo "Possible file upload attack!\n";
	}

	echo 'Informacoes:';
	print_r($_FILES);

	switch ($_FILES['uploadedfile']['error']) {
	case 0:
	echo "There is no error, the file uploaded with success. ";
	break;
	case 1:
	echo "The uploaded file exceeds the upload_max_filesize directive in php.ini.";
	break;
	case 2:
	echo "The uploaded file exceeds the MAX_FILE_SIZE directive that was specified in the HTML form.";
	break;
	case 3:
	echo "The uploaded file was only partially uploaded. ";
	break;
	case 4:
	echo "No file was uploaded. ";
	break;
	case 6:
	echo "Missing a temporary folder. Introduced in PHP 4.3.10 and PHP 5.0.3. ";
	break;
	case 7:
	echo "Failed to write file to disk. Introduced in PHP 5.1.0. ";
	break;
	case 8:
	echo "A PHP extension stopped the file upload. PHP does not provide a way to ascertain which extension caused the file upload to stop; examining the list of loaded extensions with phpinfo() may help. Introduced in PHP 5.2.0.";
	break;
	}
	print "</pre>";


	$link = mysql_connect('localhost', 'root', '') or die('N�o foi poss�vel conectar: ' . mysql_error());

	mysql_select_db('metagenoma') or die('N�o foi poss�vel selecionar o banco da dados');

	set_time_limit(0);
	$char = null;
	echo "<br/>";
	$arquivo = fopen($uploadfile, 'r');
	while (!feof($arquivo)) {
	$char .= fgetc($arquivo);
	}
	fclose($arquivo);

	$huhu = (explode("\n", $char, -1));
	$tamanho = count($huhu);

	$banco = $_POST["banco"];
	$gi = NULL;
	$sequencia = NULL;
	for ($i = 0; $i <= $tamanho - 1; $i++) {
	if (substr($huhu[$i], 0, 1) == ">") {
	if ($gi != "") {
	//echo "$gi <br/> $run </br> $sequencia</br>";
	//$sql = "INSERT INTO `geno` (`banco`, `id_read`, `run`, `sequencia`) VALUES ('$banco', '$gi', '$run', '$sequencia');";
	//$query = mysql_query($sql);
	$sequencia = "";
	}
	$gi = substr($huhu[$i], 0, 15);
	$run = substr($huhu[$i], 16, strlen($huhu[$i]));
	} else {
	$sequencia .= $huhu[$i];
	}
	}
	//echo "$gi <br/> $run </br> $sequencia</br>";
	//$sql = "INSERT INTO `geno` (`banco`, `id_read`, `run`, `sequencia`) VALUES ('$banco', '$gi', '$run', '$sequencia');";
	//$query = mysql_query($sql);
	mysql_close($link);
	}

	?>
	</body>
	</html>