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@jeanpat
jeanpat / LoadingDataset-Second Generation-save for SegCaps.ipynb
Created Aug 26, 2018
Loading a subset of images to copy them in the data directory of SegCaps
View LoadingDataset-Second Generation-save for SegCaps.ipynb
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@jeanpat
jeanpat / Cellular.py
Last active Jul 15, 2018
Modules used in telomere length modelisation
View Cellular.py
# -*- coding: utf-8 -*-
"""
Created on Wed Mar 30 13:04:37 2016
@author: jeanpat
"""
import pandas as pn
from itertools import product
import ClassChromosome as K
@jeanpat
jeanpat / Tinkering_with_OverlapSegmentationNet-01.ipynb
Last active Oct 12, 2017
Exploration of a Keras model trained for 14 epochs (not enough)
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@jeanpat
jeanpat / CurvedPointsOncontour.py
Created Aug 26, 2017
Looking for bending points on the polygonal approximation of a contour
View CurvedPointsOncontour.py
# -*- coding: utf-8 -*-
"""
Created on Tue Oct 23 08:06:37 2012
@author: Jean-Patrick
"""
import os
import numpy as np
import matplotlib.pyplot as plt
import skimage.io as sio
@jeanpat
jeanpat / cuting_touching_chromosomes.py
Created Jul 13, 2017
Try to find paths between touching mouse chromosomes to separate them
View cuting_touching_chromosomes.py
# -*- coding: utf-8 -*-
"""
Created on Tue Oct 23 08:06:37 2012
@author: Jean-Patrick
"""
import os
import numpy as np
import matplotlib.pyplot as plt
import skimage.io as sio
@jeanpat
jeanpat / Traces.ipynb
Last active Aug 30, 2017
counting impacts on a target
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@jeanpat
jeanpat / Test with tf_unet.ipynb
Created Apr 20, 2017
Try to load dataset in tf_unet
View Test with tf_unet.ipynb
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@jeanpat
jeanpat / model.py
Created Mar 19, 2017 — forked from ndronen/model.py
Semantic segmentation with ENet in PyTorch
View model.py
#!/usr/bin/env python
"""
A quick, partial implementation of ENet (https://arxiv.org/abs/1606.02147) using PyTorch.
The original Torch ENet implementation can process a 480x360 image in ~12 ms (on a P2 AWS
instance). TensorFlow takes ~35 ms. The PyTorch implementation takes ~25 ms, an improvement
over TensorFlow, but worse than the original Torch.
"""
from __future__ import absolute_import
@jeanpat
jeanpat / generating 82146 lowres.ipynb
Created Nov 22, 2016
Generating 82146 examples (greyscaled image+ ground truth label) of overlapping chromosomes
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View LoadingPairsDataset.ipynb
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