Skip to content

Instantly share code, notes, and snippets.

View jeanpat's full-sized avatar

Pommier jeanpat

18 followers · 70 following
View GitHub Profile
@jeanpat
jeanpat / Download_from_github_2164-dataset.ipynb
Created January 31, 2020 12:15
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@jeanpat
jeanpat / Clean Dataset from their spurious pixels.ipynb
Last active January 31, 2020 12:09
This jupyter notebook can be used to clean the groundtruth images from the following dataset: https://github.com/jeanpat/DeepFISH/blob/master/dataset/LowRes_13434_overlapping_pairs.h5
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@jeanpat
jeanpat / Fluctuation-naissances.ipynb
Created November 19, 2019 07:12
Introduction à python et fluctuation d'échantillonage
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@jeanpat
jeanpat / LoadingDataset-Second Generation-save for SegCaps.ipynb
Created August 26, 2018 08:23
Loading a subset of images to copy them in the data directory of SegCaps
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@jeanpat
jeanpat / Cellular.py
Last active July 15, 2018 16:50
Modules used in telomere length modelisation
# -*- coding: utf-8 -*-
"""
Created on Wed Mar 30 13:04:37 2016
@author: jeanpat
"""
import pandas as pn
from itertools import product
import ClassChromosome as K
@jeanpat
jeanpat / Tinkering_with_OverlapSegmentationNet-01.ipynb
Last active October 12, 2017 14:11
Exploration of a Keras model trained for 14 epochs (not enough)
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@jeanpat
jeanpat / CurvedPointsOncontour.py
Created August 26, 2017 10:11
Looking for bending points on the polygonal approximation of a contour
# -*- coding: utf-8 -*-
"""
Created on Tue Oct 23 08:06:37 2012
@author: Jean-Patrick
"""
import os
import numpy as np
import matplotlib.pyplot as plt
import skimage.io as sio
@jeanpat
jeanpat / cuting_touching_chromosomes.py
Created July 13, 2017 14:53
Try to find paths between touching mouse chromosomes to separate them
# -*- coding: utf-8 -*-
"""
Created on Tue Oct 23 08:06:37 2012
@author: Jean-Patrick
"""
import os
import numpy as np
import matplotlib.pyplot as plt
import skimage.io as sio
@jeanpat
jeanpat / Traces.ipynb
Last active August 30, 2017 13:55
counting impacts on a target
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@jeanpat
jeanpat / Test with tf_unet.ipynb
Created April 20, 2017 17:30
Try to load dataset in tf_unet
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.